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NC_070971.1__YP_010671824.1__PQC32_gp61__00061
Bact-VirNC_070971.1__YP_010671824.1__PQC32_gp61__00061
Identity
- Accession:
- NC_070971 ↗
- Kingdom:
- phage
Quality
76.9
mean pLDDT
Taxonomy
TaxID: 2588096
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-60
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yf2A02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.62 | 38.0 | 3.05e-01 | 88.2% | 29.9% |
| 1u0mA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.61 | 41.0 | 3.06e-01 | 72.5% | 71.2% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.49e-01 | 76.5% | 70.7% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.52e-01 | 78.4% | 65.6% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 32.0 | 3.10e-01 | 74.5% | 40.0% |
| 5khaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.57 | 39.0 | 2.52e-01 | 72.5% | 87.3% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 33.0 | 2.71e-01 | 90.2% | 29.8% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.34e-01 | 78.4% | 61.1% |
| 1r4wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 39.0 | 2.66e-01 | 76.5% | 21.2% |
| 3mfqA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 39.0 | 2.87e-01 | 74.5% | 61.0% |
| 4ehoB03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.55 | 39.0 | 2.69e-01 | 76.5% | 45.3% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 44.0 | 2.86e-01 | 100.0% | 41.8% |
| 4jaqA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 35.0 | 2.72e-01 | 70.6% | 69.7% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.53 | 35.0 | 2.52e-01 | 70.6% | 78.5% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.10e-01 | 74.5% | 72.2% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.24e-01 | 78.4% | 72.6% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 42.0 | 2.64e-01 | 100.0% | 43.1% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 36.0 | 2.68e-01 | 78.4% | 53.6% |
| 1hywA00 | 3.30.1580.10 | Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W | 0.51 | 34.0 | 3.30e-01 | 70.6% | 63.8% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 34.0 | 2.93e-01 | 70.6% | 79.1% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593051 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.74 | 39.0 | 2.57e-01 | 90.2% | 12.5% |
| 4028432 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.69 | 39.0 | 2.59e-01 | 98.0% | 13.3% |
| 3750883 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.69 | 36.0 | 2.43e-01 | 82.4% | 13.7% |
| 4457710 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 34.0 | 2.57e-01 | 78.4% | 19.2% |
| 3603654 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.63 | 42.0 | 2.84e-01 | 70.6% | 40.0% |
| 4224821 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.63 | 32.0 | 2.48e-01 | 72.5% | 20.9% |
| 5071120 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.60 | 41.0 | 3.49e-01 | 70.6% | 76.5% |
| 3571482 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 47.0 | 2.97e-01 | 94.1% | 51.2% |
| 3922539 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 44.0 | 2.94e-01 | 100.0% | 57.6% |
| 3935332 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 35.0 | 2.68e-01 | 82.4% | 24.6% |
| 338175 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.56 | 38.0 | 2.56e-01 | 80.4% | 17.9% |
| 4216626 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 39.0 | 2.39e-01 | 74.5% | 59.2% |
| 3859550 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 33.0 | 2.49e-01 | 76.5% | 25.0% |
| 3593339 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.56 | 33.0 | 2.56e-01 | 78.4% | 27.0% |
| 3996858 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.55 | 34.0 | 3.15e-01 | 80.4% | 46.2% |
| 4381440 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.55 | 34.0 | 2.61e-01 | 76.5% | 27.8% |
| 3392569 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 34.0 | 2.59e-01 | 76.5% | 25.6% |
| 3392409 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.54 | 38.0 | 2.54e-01 | 74.5% | 26.9% |
| 5029669 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 34.0 | 2.57e-01 | 88.2% | 27.5% |
| 4967461 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 35.0 | 2.97e-01 | 70.6% | 69.5% |
| 4995244 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.52 | 33.0 | 2.57e-01 | 88.2% | 30.0% |
| 3250474 | 109.1.1.7 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_3 | 0.52 | 43.0 | 3.01e-01 | 98.0% | 83.8% |
| 5061423 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 37.0 | 2.31e-01 | 78.4% | 11.6% |
| 3828336 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 33.0 | 2.73e-01 | 76.5% | 30.7% |
| 3274214 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.50 | 36.0 | 2.60e-01 | 80.4% | 85.0% |
| 3876302 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.50 | 35.0 | 2.85e-01 | 74.5% | 48.6% |
D2
high
residues 154-213
Domain cluster:
rep: OP331229.1__UZT28625.1__pD_gene0018__00017__D59-108
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 56.0 | 6.10e-01 | 83.3% | 95.8% |
| 1sfuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 57.0 | 5.46e-01 | 90.0% | 68.6% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 53.0 | 5.91e-01 | 78.3% | 100.0% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 56.0 | 5.84e-01 | 85.0% | 94.3% |
| 2e19A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 52.0 | 5.65e-01 | 86.7% | 97.9% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 60.0 | 5.15e-01 | 93.3% | 77.2% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 52.0 | 5.62e-01 | 83.3% | 100.0% |
| 1o4xA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 53.0 | 5.47e-01 | 85.0% | 88.9% |
| 1q8cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.72 | 56.0 | 4.38e-01 | 86.7% | 87.1% |
| 1e3oC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 47.0 | 5.05e-01 | 76.7% | 87.5% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 56.0 | 4.75e-01 | 90.0% | 73.5% |
| 3hwrA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.70 | 53.0 | 4.21e-01 | 85.0% | 55.8% |
| 2cfoA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.69 | 60.0 | 5.06e-01 | 100.0% | 86.5% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 49.0 | 4.72e-01 | 85.0% | 66.2% |
| 2id3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 47.0 | 5.11e-01 | 80.0% | 91.8% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 51.0 | 4.95e-01 | 83.3% | 73.5% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 48.0 | 5.16e-01 | 85.0% | 100.0% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 49.0 | 4.79e-01 | 90.0% | 77.6% |
| 4g84A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 55.0 | 3.47e-01 | 100.0% | 33.0% |
| 2y75A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 3.94e-01 | 88.3% | 41.6% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 4.85e-01 | 88.3% | 94.8% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.62 | 47.0 | 3.90e-01 | 88.3% | 54.5% |
| 1ofcX04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 50.0 | 4.37e-01 | 93.3% | 68.1% |
| 2qgyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 53.0 | 4.10e-01 | 100.0% | 53.3% |
| 2es9A00 | 1.20.1290.30 | Mainly Alpha › Up-down Bundle › AhpD-like › | 0.61 | 45.0 | 3.96e-01 | 85.0% | 56.0% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.60 | 46.0 | 3.71e-01 | 88.3% | 54.5% |
| 1bg6A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.60 | 45.0 | 3.48e-01 | 83.3% | 56.2% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.60 | 46.0 | 4.06e-01 | 86.7% | 55.3% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.60 | 48.0 | 3.87e-01 | 93.3% | 75.6% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 4.40e-01 | 100.0% | 80.0% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 46.0 | 4.54e-01 | 91.7% | 88.2% |
| 2gytA01 | 1.10.287.2070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 49.0 | 4.74e-01 | 100.0% | 90.1% |
| 4p3yB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 49.0 | 3.55e-01 | 100.0% | 74.0% |
| 1wkbA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 48.0 | 2.94e-01 | 100.0% | 73.1% |
| 3cx5G00 | 1.10.1090.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain F › Cytochrome b-c1 complex subunit 7 | 0.57 | 38.0 | 3.02e-01 | 100.0% | 33.3% |
| 4a18Q01 | 1.10.10.1760 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 | 0.57 | 47.0 | 4.58e-01 | 96.7% | 85.5% |
| 2ckzA01 | 6.10.140.870 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 40.0 | 4.36e-01 | 96.7% | 93.8% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 48.0 | 3.37e-01 | 100.0% | 80.8% |
| 2in3A02 | 1.10.472.60 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › putative protein disulfide isomerase domain | 0.55 | 45.0 | 3.63e-01 | 91.7% | 56.9% |
| 2doeA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.54 | 43.0 | 4.04e-01 | 96.7% | 83.1% |
| 3kzqA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 46.0 | 3.26e-01 | 100.0% | 79.1% |
| 5hxgB00 | 1.10.4000.10 | Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD | 0.53 | 36.0 | 3.59e-01 | 88.3% | 66.2% |
| 7dkaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 45.0 | 3.19e-01 | 96.7% | 56.4% |
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 38.0 | 4.00e-01 | 85.0% | 86.8% |
| 2cvhA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 3.04e-01 | 98.3% | 60.3% |
| 4ga6A02 | 1.20.970.50 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › | 0.51 | 40.0 | 3.19e-01 | 95.0% | 54.6% |
| 2remB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 43.0 | 3.11e-01 | 96.7% | 75.4% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.51 | 41.0 | 2.71e-01 | 100.0% | 92.4% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.51 | 38.0 | 3.41e-01 | 80.0% | 74.1% |
| 5vyoD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 44.0 | 3.16e-01 | 100.0% | 40.4% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.69e-01 | 95.0% | 83.7% |
ECOD (79)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4472631 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.80 | 57.0 | 6.34e-01 | 76.7% | 100.0% |
| 5030366 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.80 | 66.0 | 5.93e-01 | 88.3% | 83.7% |
| 3255248 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.80 | 62.0 | 5.96e-01 | 85.0% | 84.3% |
| 3513576 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.78 | 58.0 | 6.07e-01 | 88.3% | 87.3% |
| 3622015 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.77 | 58.0 | 5.87e-01 | 88.3% | 80.0% |
| 3319321 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.77 | 54.0 | 6.00e-01 | 78.3% | 100.0% |
| 4466751 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.77 | 54.0 | 6.02e-01 | 78.3% | 100.0% |
| 4440593 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.77 | 60.0 | 6.43e-01 | 85.0% | 100.0% |
| 4988614 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.77 | 62.0 | 6.09e-01 | 88.3% | 100.0% |
| 4957698 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.76 | 63.0 | 4.96e-01 | 93.3% | 68.2% |
| 4942687 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 62.0 | 5.62e-01 | 90.0% | 82.5% |
| 4167193 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.76 | 53.0 | 5.83e-01 | 78.3% | 100.0% |
| 3593317 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 59.0 | 5.61e-01 | 85.0% | 87.1% |
| 3439696 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.76 | 58.0 | 5.81e-01 | 83.3% | 98.3% |
| 4384171 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.76 | 53.0 | 5.79e-01 | 78.3% | 100.0% |
| 4111834 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.75 | 58.0 | 5.84e-01 | 85.0% | 85.0% |
| 4342260 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.75 | 53.0 | 5.81e-01 | 78.3% | 100.0% |
| 4103293 | 101.1.2.62 ↗ | alpha arrays › HTH › HTH › winged helix domain › Sigma54_DBD | 0.74 | 56.0 | 5.10e-01 | 81.7% | 66.3% |
| 3903736 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 54.0 | 5.23e-01 | 85.0% | 68.6% |
| 3962810 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.74 | 55.0 | 5.18e-01 | 85.0% | 65.3% |
| 4172794 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.73 | 53.0 | 5.09e-01 | 85.0% | 67.1% |
| 3323749 | 101.1.1.298 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 | 0.73 | 56.0 | 5.68e-01 | 85.0% | 85.0% |
| 3888041 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.73 | 54.0 | 5.28e-01 | 85.0% | 73.8% |
| 4536531 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.73 | 56.0 | 5.98e-01 | 85.0% | 100.0% |
| 4197338 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.73 | 55.0 | 5.93e-01 | 85.0% | 100.0% |
| 4033611 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 51.0 | 5.64e-01 | 78.3% | 100.0% |
| 3520270 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.72 | 56.0 | 4.76e-01 | 88.3% | 71.4% |
| 4500830 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.72 | 55.0 | 5.83e-01 | 85.0% | 100.0% |
| 4683204 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.71 | 57.0 | 4.80e-01 | 90.0% | 70.5% |
| 4323683 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.71 | 56.0 | 4.70e-01 | 90.0% | 67.3% |
| 3881313 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 54.0 | 5.29e-01 | 90.0% | 76.9% |
| 3262509 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 56.0 | 4.99e-01 | 90.0% | 63.3% |
| 3819187 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.71 | 53.0 | 4.99e-01 | 85.0% | 66.7% |
| 3657736 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.70 | 54.0 | 4.54e-01 | 88.3% | 48.6% |
| 5028090 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.70 | 51.0 | 3.88e-01 | 78.3% | 34.5% |
| 4930318 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.70 | 57.0 | 4.52e-01 | 93.3% | 71.5% |
| 3467989 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 53.0 | 5.37e-01 | 83.3% | 90.0% |
| 4575061 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.70 | 53.0 | 5.64e-01 | 85.0% | 100.0% |
| 3904295 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.69 | 50.0 | 4.96e-01 | 85.0% | 72.3% |
| 4016331 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.69 | 50.0 | 4.97e-01 | 85.0% | 73.8% |
| 3236669 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.69 | 55.0 | 5.14e-01 | 90.0% | 70.7% |
| 4977226 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 59.0 | 5.53e-01 | 96.7% | 89.3% |
| 4479187 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.69 | 54.0 | 5.36e-01 | 88.3% | 83.1% |
| 3889817 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 52.0 | 4.74e-01 | 83.3% | 62.5% |
| 4404513 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 51.0 | 4.77e-01 | 85.0% | 65.3% |
| 3684546 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 51.0 | 4.31e-01 | 83.3% | 47.6% |
| 3246596 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 51.0 | 4.81e-01 | 83.3% | 66.7% |
| 3485420 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.67 | 52.0 | 5.29e-01 | 98.3% | 88.3% |
| 3242555 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.67 | 48.0 | 3.95e-01 | 85.0% | 39.2% |
| 3446951 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.67 | 50.0 | 4.47e-01 | 86.7% | 55.6% |
| 3804069 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.67 | 58.0 | 5.03e-01 | 100.0% | 71.6% |
| 3229130 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.67 | 50.0 | 5.29e-01 | 83.3% | 98.0% |
| 3767171 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.66 | 51.0 | 4.51e-01 | 90.0% | 55.8% |
| 3470203 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.66 | 52.0 | 5.34e-01 | 90.0% | 96.4% |
| 3836601 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 50.0 | 4.96e-01 | 88.3% | 80.0% |
| 4468962 | 101.1.1.46 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 | 0.65 | 51.0 | 5.04e-01 | 88.3% | 86.2% |
| 4355220 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.65 | 52.0 | 4.21e-01 | 95.0% | 82.3% |
| 4452821 | 101.1.2.604 ↗ | alpha arrays › HTH › HTH › winged helix domain › SGIII | 0.64 | 48.0 | 4.62e-01 | 86.7% | 72.0% |
| 3219880 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.64 | 50.0 | 5.16e-01 | 88.3% | 94.5% |
| 4967279 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.64 | 52.0 | 4.31e-01 | 93.3% | 74.8% |
| 3707222 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 48.0 | 4.94e-01 | 83.3% | 94.5% |
| 4311936 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.63 | 48.0 | 4.80e-01 | 85.0% | 85.0% |
| 3170794 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 53.0 | 4.75e-01 | 100.0% | 81.1% |
| 3283752 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.63 | 47.0 | 4.13e-01 | 83.3% | 54.7% |
| 5008529 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.62 | 49.0 | 3.61e-01 | 91.7% | 69.3% |
| 3443787 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.70e-01 | 98.3% | 75.3% |
| 5026679 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.61 | 50.0 | 3.44e-01 | 98.3% | 53.2% |
| 5074521 | 3009.1.1.1 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA | 0.60 | 44.0 | 3.67e-01 | 76.7% | 45.7% |
| 3986875 | 4254.1.1.1 ↗ | alpha arrays › YoaC-like › YoaC-like › YoaC-like › DUF1889 | 0.60 | 46.0 | 4.35e-01 | 85.0% | 80.8% |
| 4132802 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.58 | 48.0 | 3.69e-01 | 96.7% | 61.3% |
| 4632127 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 40.0 | 3.57e-01 | 73.3% | 88.2% |
| 314012 | 4254.1.1.1 ↗ | alpha arrays › YoaC-like › YoaC-like › YoaC-like › DUF1889 | 0.56 | 44.0 | 3.77e-01 | 90.0% | 52.8% |
| 4927987 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.56 | 47.0 | 3.03e-01 | 98.3% | 20.5% |
| 3370602 | 109.4.1.1520 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif | 0.55 | 42.0 | 2.71e-01 | 86.7% | 92.4% |
| 3757344 | 101.1.1.90 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › COQ9_N | 0.55 | 42.0 | 3.82e-01 | 90.0% | 61.2% |
| 1653664 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.53 | 40.0 | 3.99e-01 | 83.3% | 82.8% |
| 4552196 | 2485.1.1.42 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_5 | 0.52 | 45.0 | 3.11e-01 | 100.0% | 39.6% |
| 5011354 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.52 | 44.0 | 3.22e-01 | 100.0% | 36.8% |
| 3936880 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.52 | 34.0 | 3.50e-01 | 70.0% | 85.0% |
D3
medium
residues 67-132
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4efiA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 40.0 | 2.61e-01 | 87.9% | 80.2% |
| 3khyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.16e-01 | 100.0% | 69.1% |