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NC_070973.1__YP_010671940.1__PQC34_gp042__00068

Bact-Vir

NC_070973.1__YP_010671940.1__PQC34_gp042__00068

Identity

Accession:
NC_070973 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Crifsvirus› Cronobacter_phage_A24

TaxID: 2795745

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4af1A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.75 51.0 3.85e-01 71.7% 80.2%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.73 56.0 4.46e-01 84.9% 55.9%
2f51A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 50.0 3.94e-01 71.7% 77.5%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.73 50.0 3.79e-01 71.7% 73.8%
2vgnA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.72 49.0 3.73e-01 71.7% 70.1%
7vyjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 49.0 3.37e-01 71.7% 75.3%
3agkA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.72 49.0 3.71e-01 71.7% 71.0%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.71 60.0 4.15e-01 100.0% 48.2%
3obyA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.71 49.0 3.90e-01 73.6% 67.9%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.71 60.0 4.14e-01 100.0% 48.5%
1dt9A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.71 49.0 3.81e-01 71.7% 70.5%
4b9gA00 2.60.40.3480 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 55.0 3.92e-01 84.9% 95.9%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.69 52.0 3.75e-01 83.0% 82.6%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.67 46.0 3.54e-01 71.7% 69.7%
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 46.0 3.82e-01 88.7% 40.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 4.97e-01 100.0% 61.6%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 52.0 3.95e-01 86.8% 62.8%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.66 45.0 3.51e-01 71.7% 69.5%
1wgvA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 53.0 4.14e-01 92.5% 51.6%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 4.35e-01 100.0% 57.0%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.64 53.0 4.12e-01 94.3% 86.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 4.87e-01 100.0% 85.0%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 56.0 3.38e-01 100.0% 99.7%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.63 52.0 3.71e-01 100.0% 29.4%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.63 42.0 3.00e-01 71.7% 76.5%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 4.29e-01 100.0% 67.8%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.18e-01 92.5% 95.2%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.19e-01 100.0% 57.7%
4wvmA04 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.62 53.0 3.67e-01 100.0% 51.0%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 3.60e-01 84.9% 94.4%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 4.12e-01 100.0% 70.5%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 3.31e-01 77.4% 32.8%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.18e-01 94.3% 94.2%
8oqxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 41.0 3.29e-01 71.7% 70.2%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.43e-01 77.4% 76.4%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.11e-01 100.0% 99.4%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.10e-01 77.4% 36.9%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 43.0 3.35e-01 83.0% 79.5%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.56 45.0 4.08e-01 100.0% 64.9%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.11e-01 84.9% 85.2%
2qa1A02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 4.20e-01 100.0% 96.2%
1qh5A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 37.0 2.48e-01 73.6% 82.3%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.77e-01 98.1% 87.7%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.41e-01 75.5% 84.2%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 44.0 2.91e-01 100.0% 23.2%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 40.0 2.90e-01 88.7% 73.7%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 43.0 4.04e-01 96.2% 84.8%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.47e-01 100.0% 87.3%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.51 41.0 3.37e-01 100.0% 60.7%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.09e-01 92.5% 78.0%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.27e-01 79.2% 62.3%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 68.0 6.73e-01 98.1% 90.9%
4936345 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 51.0 4.71e-01 71.7% 60.0%
4626818 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.76 52.0 4.13e-01 71.7% 61.9%
3763965 5.1.4.341 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd 0.74 51.0 3.05e-01 71.7% 10.7%
3742632 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.74 51.0 3.15e-01 71.7% 20.0%
3844573 5.1.3.170 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd 0.74 51.0 3.04e-01 71.7% 10.9%
4937453 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.73 50.0 3.72e-01 71.7% 75.6%
3830390 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.73 52.0 3.16e-01 73.6% 21.0%
3781917 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.73 50.0 3.06e-01 71.7% 20.3%
4968449 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.71 45.0 4.19e-01 81.1% 50.8%
1005444 295.2.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › Outer surface protein E › Outer surface protein E › OspE 0.71 50.0 3.61e-01 73.6% 79.5%
5052862 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 48.0 3.79e-01 71.7% 46.1%
4983045 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.71 48.0 3.58e-01 71.7% 70.7%
3549654 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 48.0 2.56e-01 71.7% 8.1%
3481354 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 49.0 2.99e-01 73.6% 14.2%
5030870 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.69 48.0 4.03e-01 71.7% 54.4%
3167693 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 53.0 3.04e-01 100.0% 8.6%
3231860 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 61.0 4.65e-01 100.0% 67.5%
3511590 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 56.0 4.54e-01 96.2% 84.8%
4948698 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.66 45.0 3.55e-01 71.7% 49.6%
3203836 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.66 52.0 3.37e-01 100.0% 19.2%
3587958 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 4.89e-01 100.0% 78.9%
3704305 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.65 57.0 5.27e-01 100.0% 75.7%
3736175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.67e-01 98.1% 60.0%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 57.0 4.70e-01 100.0% 61.1%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.64 57.0 4.97e-01 100.0% 76.2%
3905525 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 57.0 4.36e-01 100.0% 57.5%
3910728 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.64 51.0 3.77e-01 92.5% 41.3%
3973076 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.63 51.0 3.46e-01 98.1% 22.2%
3490944 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 51.0 3.79e-01 92.5% 52.4%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.63 52.0 4.51e-01 100.0% 58.8%
3945385 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.63 49.0 3.36e-01 84.9% 38.9%
3384882 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 51.0 4.24e-01 94.3% 67.0%
3970247 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.63 55.0 4.31e-01 96.2% 92.7%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.84e-01 100.0% 66.3%
3487523 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.62 53.0 4.46e-01 96.2% 67.4%
4964835 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.62 45.0 3.51e-01 77.4% 82.6%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 43.0 3.28e-01 73.6% 44.6%
3591883 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.62 46.0 2.87e-01 100.0% 13.7%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 4.74e-01 100.0% 69.3%
3275991 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 54.0 4.02e-01 100.0% 62.2%
3259368 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.61 52.0 3.05e-01 98.1% 10.7%
3731706 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.61 53.0 3.12e-01 94.3% 15.6%
3495619 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 50.0 4.07e-01 96.2% 75.5%
3530195 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 55.0 4.18e-01 100.0% 55.0%
3941131 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.61 53.0 3.22e-01 96.2% 19.7%
3433333 5.1.5.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_At4g14310 0.61 48.0 3.05e-01 100.0% 16.1%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 53.0 4.68e-01 100.0% 73.8%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 52.0 4.53e-01 100.0% 63.5%
3392308 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.61 50.0 4.24e-01 96.2% 91.6%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 53.0 4.86e-01 100.0% 75.7%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 51.0 4.26e-01 100.0% 53.0%
3589304 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.60 49.0 4.40e-01 90.6% 89.3%
3386077 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.59 41.0 4.39e-01 75.5% 91.1%
5050417 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 53.0 3.21e-01 100.0% 51.1%
3705938 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 53.0 3.97e-01 98.1% 72.5%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 46.0 4.00e-01 100.0% 54.4%
3536857 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.57 46.0 3.27e-01 88.7% 81.2%
3252177 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 3.89e-01 100.0% 81.8%
3708814 5.1.4.102 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.55 47.0 3.02e-01 100.0% 92.1%
5004113 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 42.0 3.91e-01 94.3% 81.3%
1171964 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.53 41.0 4.06e-01 86.8% 82.8%
4951974 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 41.0 3.61e-01 94.3% 67.4%
5012193 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 3.10e-01 100.0% 36.2%
1565067 9.23.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_8 0.52 45.0 3.49e-01 100.0% 90.9%
3761877 391.1.2.13 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1-VW_OTOGL 0.51 35.0 2.45e-01 100.0% 22.0%
3999005 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.50 38.0 3.61e-01 84.9% 92.3%