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NC_070974.1__YP_010672036.1__PQC35_gp112__00056

Bact-Vir

NC_070974.1__YP_010672036.1__PQC35_gp112__00056

Identity

Accession:
NC_070974 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Moazamivirus› Salmonella_phage_SE131

TaxID: 2081631

Cluster

View cluster (31 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-60
PDB
Domain cluster: rep: NC_070786.1__YP_010652529.1__PP460_gp029__00215__D4-55
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 5.40e-01 100.0% 68.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.43e-01 100.0% 69.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.34e-01 100.0% 76.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.15e-01 100.0% 61.6%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.30e-01 98.3% 91.8%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.98e-01 100.0% 65.1%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 40.0 3.21e-01 78.0% 29.3%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.87e-01 100.0% 79.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 4.99e-01 100.0% 85.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.62 47.0 4.38e-01 100.0% 64.9%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 4.94e-01 100.0% 82.3%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 5.08e-01 100.0% 85.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 44.0 4.48e-01 100.0% 83.3%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 5.35e-01 100.0% 98.3%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 42.0 3.59e-01 76.3% 86.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 44.0 3.31e-01 83.1% 80.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 4.15e-01 81.4% 73.8%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 3.30e-01 81.4% 81.8%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.36e-01 100.0% 45.9%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 44.0 3.31e-01 100.0% 34.5%
3ipjA01 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.57 45.0 4.16e-01 89.8% 96.2%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 3.53e-01 100.0% 42.7%
2g7uC02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 42.0 3.00e-01 79.7% 77.0%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.13e-01 78.0% 34.8%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 45.0 3.07e-01 91.5% 41.1%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.55 40.0 2.90e-01 78.0% 79.5%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.19e-01 100.0% 36.3%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.15e-01 100.0% 35.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.90e-01 100.0% 82.1%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.38e-01 100.0% 49.0%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 2.95e-01 100.0% 30.2%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.71e-01 100.0% 61.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.88e-01 98.3% 74.2%
2fpnA02 3.30.360.40 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like 0.53 39.0 3.90e-01 84.7% 84.6%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.66e-01 93.2% 71.6%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.52 38.0 3.18e-01 84.7% 99.2%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 45.0 3.52e-01 100.0% 90.2%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.32e-01 100.0% 52.2%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 44.0 3.25e-01 100.0% 64.5%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.51 31.0 3.27e-01 79.7% 69.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.42e-01 100.0% 63.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.50 43.0 3.58e-01 100.0% 91.8%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.50 41.0 3.08e-01 94.9% 50.9%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.50 37.0 3.42e-01 81.4% 91.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.53e-01 100.0% 71.9%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 61.0 5.88e-01 100.0% 76.9%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 57.0 5.47e-01 100.0% 72.5%
4380345 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.72 57.0 5.04e-01 100.0% 60.0%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.04e-01 100.0% 68.6%
3624163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.12e-01 100.0% 60.0%
3574742 4.1.1.47 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin6 0.70 58.0 5.07e-01 100.0% 60.0%
3704305 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.70 56.0 5.38e-01 100.0% 75.7%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.69 56.0 5.13e-01 100.0% 67.5%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.26e-01 100.0% 81.7%
3936053 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.69 58.0 5.45e-01 100.0% 77.1%
858452 4.1.1.476 ↗ beta barrels › SH3 › SH3 › SH3 › PF30873 0.69 52.0 4.46e-01 100.0% 51.0%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.68 54.0 4.90e-01 100.0% 63.5%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 4.88e-01 100.0% 75.0%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 50.0 4.90e-01 100.0% 73.8%
3973676 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 48.0 3.82e-01 100.0% 36.3%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 4.82e-01 100.0% 70.0%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.88e-01 100.0% 69.3%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.69e-01 100.0% 87.1%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.90e-01 100.0% 66.3%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.66 51.0 4.56e-01 100.0% 58.8%
4031509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.80e-01 100.0% 78.3%
3936130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.60e-01 100.0% 56.8%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 56.0 4.82e-01 100.0% 61.1%
3197566 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.65 58.0 4.86e-01 100.0% 78.0%
5048425 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.12e-01 100.0% 95.0%
4013632 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 59.0 5.33e-01 100.0% 75.6%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.64 52.0 4.78e-01 100.0% 67.5%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.64 49.0 4.56e-01 100.0% 65.0%
3297150 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 4.49e-01 94.9% 95.0%
3604284 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 4.41e-01 91.5% 87.4%
5038431 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.15e-01 100.0% 81.4%
4555816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.76e-01 100.0% 67.1%
4961804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 56.0 5.19e-01 100.0% 85.3%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 46.0 4.13e-01 100.0% 54.4%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.67e-01 100.0% 89.1%
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 53.0 4.71e-01 100.0% 67.1%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.62 53.0 4.87e-01 100.0% 77.5%
3225056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.41e-01 100.0% 64.5%
3598657 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.63e-01 100.0% 59.0%
3250427 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 48.0 3.94e-01 86.4% 90.0%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 49.0 4.67e-01 100.0% 75.7%
4990442 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.61 55.0 4.94e-01 100.0% 73.8%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.44e-01 100.0% 60.0%
3907190 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 50.0 4.38e-01 100.0% 58.9%
3730011 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 52.0 3.94e-01 100.0% 40.0%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.37e-01 100.0% 53.6%
4228570 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.73e-01 100.0% 78.8%
3389662 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.59 50.0 4.63e-01 100.0% 75.0%
4026222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 3.83e-01 100.0% 66.9%
154312 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.58 42.0 4.02e-01 100.0% 67.1%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 39.0 3.70e-01 74.6% 77.3%
3536857 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.56 46.0 3.41e-01 93.2% 78.8%
3220403 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.07e-01 100.0% 72.4%
3504417 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 40.0 3.58e-01 100.0% 52.2%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 43.0 3.46e-01 100.0% 41.5%
3825252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.10e-01 100.0% 73.3%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.54 41.0 3.74e-01 100.0% 61.2%
1878249 11.1.1.256 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.54 40.0 3.39e-01 100.0% 49.0%
4395961 212.1.1.14 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.53 43.0 3.12e-01 89.8% 65.3%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 42.0 4.03e-01 100.0% 81.3%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.52 43.0 3.85e-01 100.0% 82.2%
3583260 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.52 45.0 3.65e-01 100.0% 60.9%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.51 37.0 3.42e-01 98.3% 56.5%
4268386 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.77e-01 100.0% 74.3%
4622062 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 2.99e-01 100.0% 27.7%
4581369 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.51 44.0 3.69e-01 100.0% 61.9%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.50 42.0 3.72e-01 100.0% 63.2%
3252177 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.56e-01 100.0% 82.7%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.50 42.0 3.53e-01 100.0% 67.3%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.50 36.0 2.75e-01 79.7% 32.5%
4026282 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 36.0 3.24e-01 100.0% 52.2%