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NC_070974.1__YP_010672046.1__PQC35_gp102__00066

Bact-Vir

NC_070974.1__YP_010672046.1__PQC35_gp102__00066

Identity

Accession:
NC_070974 ↗
Kingdom:
phage

Quality

66.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Moazamivirus› Salmonella_phage_SE131

TaxID: 2081631

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-87
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.83 54.0 6.47e-01 96.4% 96.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 51.0 5.60e-01 88.0% 76.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 53.0 6.03e-01 92.8% 90.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.80 55.0 5.28e-01 71.1% 87.4%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 55.0 6.27e-01 95.2% 95.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 5.82e-01 100.0% 80.3%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 4.98e-01 94.0% 61.1%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.57e-01 74.7% 98.3%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 60.0 4.88e-01 92.8% 82.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.90e-01 89.2% 98.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 4.75e-01 75.9% 66.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 53.0 5.69e-01 94.0% 94.4%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.45e-01 91.6% 58.0%
3ptaA03 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 54.0 4.28e-01 89.2% 59.9%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.69e-01 88.0% 100.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.66 60.0 4.86e-01 98.8% 59.6%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 51.0 3.35e-01 84.3% 57.6%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 57.0 4.72e-01 98.8% 60.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 57.0 4.06e-01 98.8% 37.2%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.62 51.0 4.03e-01 88.0% 72.5%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 56.0 4.57e-01 98.8% 62.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.57e-01 84.3% 87.5%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 53.0 4.69e-01 96.4% 71.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.66e-01 84.3% 88.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 4.15e-01 77.1% 80.0%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 38.0 4.27e-01 96.4% 98.4%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 47.0 3.94e-01 96.4% 80.1%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 47.0 3.70e-01 98.8% 94.2%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.11e-01 97.6% 47.1%
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 46.0 3.44e-01 98.8% 86.2%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.08e-01 97.6% 48.1%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 44.0 3.75e-01 100.0% 97.9%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.50 39.0 3.63e-01 86.7% 66.7%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 55.0 6.51e-01 95.2% 95.0%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 55.0 6.02e-01 94.0% 81.4%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 57.0 4.94e-01 96.4% 50.0%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 55.0 5.22e-01 94.0% 62.1%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 54.0 4.75e-01 94.0% 50.4%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.79 53.0 6.16e-01 95.2% 95.0%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.79 51.0 6.15e-01 92.8% 100.0%
3550047 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.78 55.0 4.23e-01 72.3% 58.8%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 52.0 6.04e-01 94.0% 95.0%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 54.0 6.04e-01 95.2% 90.8%
4565130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 54.0 5.18e-01 94.0% 63.2%
3870945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 54.0 3.98e-01 72.3% 50.0%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.77 53.0 4.63e-01 95.2% 49.2%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 6.03e-01 92.8% 96.7%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 53.0 4.80e-01 72.3% 83.6%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 6.02e-01 95.2% 96.7%
5017073 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.76 52.0 4.21e-01 88.0% 39.3%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 53.0 4.68e-01 90.4% 51.7%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 54.0 5.71e-01 95.2% 85.3%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.74 51.0 4.06e-01 71.1% 44.5%
3889197 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.73 63.0 4.83e-01 90.4% 71.2%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.73 50.0 3.99e-01 71.1% 42.5%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.72 51.0 4.83e-01 92.8% 63.2%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.32e-01 71.1% 97.1%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 52.0 5.63e-01 95.2% 90.0%
3629455 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.71 63.0 4.73e-01 95.2% 72.1%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.71 57.0 6.02e-01 85.5% 98.7%
3460287 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.70 58.0 4.58e-01 88.0% 68.8%
3823515 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.70 58.0 4.62e-01 88.0% 72.3%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 53.0 5.77e-01 94.0% 94.3%
3819710 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.70 58.0 4.28e-01 88.0% 51.5%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 49.0 4.77e-01 95.2% 67.8%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.69 51.0 5.24e-01 89.2% 81.2%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.69 50.0 4.61e-01 92.8% 60.0%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 56.0 5.56e-01 89.2% 83.5%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 51.0 4.85e-01 90.4% 67.0%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.04e-01 89.2% 80.0%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 51.0 5.28e-01 92.8% 82.5%
2672307 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.68 58.0 4.65e-01 92.8% 69.9%
2709276 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.67 55.0 4.43e-01 88.0% 65.0%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 57.0 5.45e-01 91.6% 92.6%
3334435 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.67 57.0 4.61e-01 92.8% 72.9%
3188023 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.64 59.0 4.21e-01 98.8% 39.5%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.15e-01 88.0% 51.2%
3725153 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.63 48.0 4.90e-01 88.0% 82.5%
3799904 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.63 55.0 3.47e-01 94.0% 36.3%
3992087 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 58.0 4.47e-01 98.8% 52.4%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 57.0 4.77e-01 98.8% 63.8%
3824811 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 58.0 4.64e-01 100.0% 65.8%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.44e-01 98.8% 87.4%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.62 49.0 4.55e-01 88.0% 65.7%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 57.0 4.83e-01 98.8% 65.4%
None — 0.62 53.0 4.14e-01 92.8% 61.8%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 48.0 4.44e-01 88.0% 65.7%
3501834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 55.0 5.52e-01 97.6% 97.6%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 56.0 3.19e-01 100.0% 11.9%
3836457 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.61 52.0 4.24e-01 92.8% 56.0%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 48.0 4.66e-01 92.8% 77.8%
3588655 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 51.0 3.94e-01 94.0% 97.3%
2389888 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 54.0 4.01e-01 98.8% 42.6%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 5.19e-01 95.2% 96.2%
3530890 2004.1.1.402 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT 0.59 46.0 4.59e-01 85.5% 93.2%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.59 50.0 4.79e-01 92.8% 84.2%
3310577 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.59 51.0 4.79e-01 94.0% 80.0%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 48.0 4.82e-01 94.0% 88.2%
3413037 219.1.1.94 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ACTMAP-like_C 0.57 50.0 3.69e-01 97.6% 81.3%
3196565 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 49.0 3.35e-01 97.6% 30.2%
3831409 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 49.0 4.64e-01 94.0% 81.0%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.57 48.0 4.17e-01 94.0% 63.1%
3530891 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 44.0 4.08e-01 95.2% 66.1%
3210555 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 48.0 3.20e-01 97.6% 26.8%
3277727 4.8.1.43 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.53 41.0 3.98e-01 88.0% 72.6%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.53 47.0 3.70e-01 98.8% 94.2%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.52 40.0 3.87e-01 95.2% 74.7%
D2 high residues 90-165
PDB