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NC_070974.1__YP_010672077.1__PQC35_gp071__00097

Bact-Vir

NC_070974.1__YP_010672077.1__PQC35_gp071__00097

Identity

Accession:
NC_070974 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Moazamivirus› Salmonella_phage_SE131

TaxID: 2081631

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-65
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 50.0 5.16e-01 75.9% 68.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.78 63.0 5.18e-01 88.9% 53.6%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.30e-01 85.2% 59.8%
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 57.0 5.61e-01 88.9% 87.9%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 55.0 5.10e-01 85.2% 71.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 4.71e-01 85.2% 58.8%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.39e-01 98.1% 94.7%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.69 57.0 4.83e-01 96.3% 76.6%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.68 54.0 4.97e-01 83.3% 72.7%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.95e-01 81.5% 88.9%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 49.0 3.25e-01 77.8% 79.7%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 4.89e-01 83.3% 76.2%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 46.0 4.75e-01 74.1% 86.0%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.55e-01 90.7% 85.9%
3a1kA01 1.10.20.60 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain 0.62 44.0 4.42e-01 77.8% 94.4%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 40.0 3.56e-01 83.3% 47.4%
3ejnA03 1.20.120.840 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SusD-like, tetratrico peptide repeats domain 0.60 50.0 3.92e-01 90.7% 44.1%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.59 41.0 3.87e-01 72.2% 60.9%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.57 47.0 3.83e-01 94.4% 59.8%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 2.96e-01 98.1% 66.1%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.57 50.0 3.66e-01 100.0% 54.5%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.53 42.0 3.40e-01 94.4% 86.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5024512 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.87 64.0 6.63e-01 77.8% 86.0%
3506989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 64.0 6.65e-01 83.3% 94.0%
3940641 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 69.0 6.49e-01 92.6% 76.9%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 68.0 6.77e-01 90.7% 94.5%
4928271 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 58.0 6.44e-01 74.1% 100.0%
4944585 101.1.2.872 ↗ alpha arrays › HTH › HTH › winged helix domain › rve 0.81 61.0 5.88e-01 79.6% 76.7%
3239718 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 62.0 5.83e-01 83.3% 69.2%
5079733 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.45e-01 85.2% 64.0%
3619546 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.77 57.0 5.40e-01 79.6% 67.7%
5065073 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.77 66.0 6.41e-01 94.4% 90.0%
4956762 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.76 62.0 6.17e-01 88.9% 92.7%
5037265 102.1.1.11 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.76 60.0 4.82e-01 88.9% 45.5%
4968278 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.75 61.0 5.28e-01 90.7% 88.2%
3611890 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.75 61.0 5.89e-01 88.9% 83.3%
3590474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 63.0 5.47e-01 96.3% 67.1%
4929680 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 64.0 6.29e-01 100.0% 96.7%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 5.44e-01 87.0% 67.1%
4948139 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.74 60.0 6.04e-01 88.9% 92.7%
4957413 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.74 57.0 5.85e-01 83.3% 90.0%
3602476 1091.1.1.1 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.74 60.0 5.99e-01 88.9% 92.7%
5044657 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 58.0 5.66e-01 88.9% 83.3%
3870636 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 5.34e-01 85.2% 100.0%
3881313 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 54.0 5.17e-01 83.3% 73.8%
3890613 101.1.2.698 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27079 0.72 56.0 5.30e-01 85.2% 76.9%
3899987 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.72 56.0 4.82e-01 85.2% 56.5%
4971352 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 4.80e-01 85.2% 56.5%
3672635 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.72 63.0 5.59e-01 96.3% 78.7%
3987405 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.72 61.0 5.18e-01 96.3% 64.4%
3941666 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 55.0 4.93e-01 81.5% 59.5%
4609007 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.71 55.0 5.67e-01 85.2% 100.0%
4459730 4990.1.1.1 ↗ alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap 0.71 60.0 3.85e-01 100.0% 19.6%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.07e-01 90.7% 65.0%
5074546 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 4.94e-01 90.7% 60.0%
4978129 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 61.0 3.66e-01 100.0% 13.4%
3787963 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 48.0 4.59e-01 75.9% 61.5%
3174238 101.1.1.247 ↗ alpha arrays › HTH › HTH › Three-helical HTH › zf-H2C2 0.69 55.0 5.10e-01 90.7% 68.6%
5036863 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 56.0 3.71e-01 90.7% 26.5%
4971151 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.68 59.0 4.07e-01 100.0% 89.9%
5045747 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 54.0 4.62e-01 90.7% 76.7%
3946360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 5.15e-01 96.3% 86.2%
3925228 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.66 49.0 4.68e-01 81.5% 67.7%
3928773 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.02e-01 96.3% 69.3%
3960907 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 50.0 3.15e-01 85.2% 17.2%
3254681 192.15.1.110 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › ELO 0.65 58.0 3.91e-01 100.0% 56.1%
3269500 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.10e-01 83.3% 49.5%
4300466 4993.1.1.1 ↗ extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC 0.63 43.0 3.58e-01 74.1% 39.0%
None — 0.63 49.0 3.09e-01 90.7% 17.9%
3791606 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.60 52.0 3.55e-01 96.3% 28.9%
3428408 632.2.1.30 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Auxin_canalis 0.60 51.0 4.52e-01 92.6% 77.3%
3543076 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.59 52.0 3.52e-01 100.0% 85.0%
5052428 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.55 48.0 4.13e-01 96.3% 61.9%
3925644 3198.1.1.1 ↗ alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.55 48.0 3.70e-01 100.0% 75.2%