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NC_070975.1__YP_010672208.1__PQC36_gp081__00081

Bact-Vir

NC_070975.1__YP_010672208.1__PQC36_gp081__00081

Identity

Accession:
NC_070975 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_Vb_PmiP-P59

TaxID: 2754975

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-106
PDB
Domain cluster: rep: pre3_saliva_scaffold_7_prodigal-single.1__X__X__00232__D3-81
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03477.22 best ATP-cone 73.3 2.70e-20 95.6% 97.7%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.72 47.0 5.28e-01 82.4% 85.9%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.72 48.0 5.28e-01 83.5% 86.1%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.70 61.0 5.21e-01 95.6% 70.8%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.69 57.0 5.89e-01 98.9% 96.5%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 54.0 5.17e-01 86.8% 78.3%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.67 51.0 5.27e-01 85.7% 87.4%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 55.0 5.14e-01 94.5% 73.5%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 48.0 5.06e-01 80.2% 85.5%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 56.0 5.02e-01 96.7% 77.3%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 46.0 4.80e-01 76.9% 80.0%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 46.0 4.79e-01 80.2% 84.1%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 42.0 4.67e-01 85.7% 89.7%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.64 56.0 4.80e-01 98.9% 89.9%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.63 43.0 4.69e-01 70.3% 88.7%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 49.0 4.55e-01 85.7% 68.7%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 45.0 4.57e-01 80.2% 80.7%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.61 45.0 4.69e-01 78.0% 88.9%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 48.0 5.00e-01 87.9% 97.5%
1wwiA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.59 41.0 3.54e-01 72.5% 86.4%
7r8bB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 36.0 2.54e-01 96.7% 20.1%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 34.0 3.85e-01 81.3% 77.6%
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.58 46.0 4.19e-01 87.9% 83.3%
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 41.0 4.54e-01 82.4% 97.1%
2yxlA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 51.0 4.30e-01 98.9% 67.8%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 48.0 4.90e-01 91.2% 100.0%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.57 30.0 3.24e-01 94.5% 56.2%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 50.0 4.34e-01 96.7% 72.5%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 4.29e-01 94.5% 65.7%
2hxoA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.70e-01 81.3% 84.7%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.56 40.0 3.90e-01 75.8% 77.5%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.55 45.0 4.85e-01 91.2% 100.0%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.55 41.0 4.15e-01 87.9% 82.2%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 47.0 4.10e-01 96.7% 70.2%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.54 34.0 3.90e-01 71.4% 95.0%
1f81A00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.54 32.0 3.35e-01 98.9% 62.1%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 45.0 4.64e-01 91.2% 100.0%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 35.0 3.58e-01 100.0% 68.1%
1xrhD01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.53 48.0 4.58e-01 96.7% 100.0%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 35.0 3.64e-01 94.5% 71.3%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 36.0 3.60e-01 71.4% 71.4%
7ahdC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 3.01e-01 84.6% 31.5%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.78e-01 94.5% 79.3%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.52 33.0 4.00e-01 96.7% 98.4%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 32.0 3.73e-01 89.0% 100.0%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 36.0 3.77e-01 84.6% 84.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934727 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.96 90.0 8.85e-01 96.7% 96.8%
4681348 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.96 93.0 8.92e-01 100.0% 99.0%
4927666 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.96 91.0 8.80e-01 98.9% 96.0%
4957090 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.96 88.0 8.67e-01 95.6% 95.8%
3980780 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.96 88.0 8.88e-01 95.6% 96.7%
3989376 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.96 92.0 8.66e-01 100.0% 91.4%
3946182 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.96 88.0 8.88e-01 95.6% 96.7%
5058165 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.95 83.0 8.60e-01 96.7% 96.5%
5066162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.95 90.0 8.70e-01 98.9% 93.0%
1878970 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.95 91.0 8.66e-01 100.0% 96.1%
4993731 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.95 91.0 8.55e-01 100.0% 89.5%
5034061 148.1.3.400 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN 0.94 91.0 6.82e-01 100.0% 50.5%
4096162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.94 86.0 8.33e-01 95.6% 100.0%
2141738 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.94 88.0 8.56e-01 98.9% 97.0%
5074671 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.93 82.0 8.47e-01 97.8% 97.6%
5057106 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 81.0 8.23e-01 94.5% 97.8%
4943010 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 80.0 8.31e-01 92.3% 100.0%
4996564 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.91 80.0 8.29e-01 96.7% 98.8%
5001059 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 74.0 7.86e-01 92.3% 97.5%
4989754 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 74.0 7.87e-01 92.3% 97.5%
4956905 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 74.0 7.87e-01 92.3% 97.5%
4507907 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 78.0 8.15e-01 93.4% 97.6%
4945368 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.90 75.0 8.01e-01 95.6% 100.0%
4160317 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 78.0 7.10e-01 95.6% 74.8%
4238441 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 72.0 7.72e-01 89.0% 100.0%
4626373 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 77.0 7.30e-01 96.7% 81.9%
5051773 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 76.0 7.73e-01 96.7% 95.6%
4388542 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 78.0 7.53e-01 96.7% 87.0%
4257906 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 80.0 8.05e-01 97.8% 100.0%
4056578 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 75.0 6.95e-01 92.3% 77.3%
5004355 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.82 73.0 7.43e-01 94.5% 100.0%
3783718 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.81 56.0 6.28e-01 75.8% 91.4%
3583686 148.1.3.45 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYN_lid 0.70 62.0 5.38e-01 95.6% 75.6%
3889043 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.68 57.0 4.27e-01 93.4% 48.9%
3689393 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.66 58.0 5.36e-01 97.8% 99.1%
4398165 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.65 47.0 4.42e-01 80.2% 62.7%
4942070 5050.1.1.87 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › LPG_synthase_TM 0.60 51.0 3.80e-01 95.6% 72.8%
4547252 194.1.1.1 ↗ alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.60 50.0 4.00e-01 90.1% 53.3%
4076702 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.60 42.0 4.15e-01 79.1% 67.0%
4960441 5076.2.1.18 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF6159 0.58 48.0 3.55e-01 91.2% 54.7%
3608405 2485.1.1.51 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.58 49.0 3.65e-01 96.7% 50.8%
5000894 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.57 49.0 3.29e-01 98.9% 71.1%
3630497 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.57 47.0 3.84e-01 87.9% 67.9%
1031092 3705.1.1.1 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › T2SS_PulS_OutS 0.57 41.0 4.08e-01 75.8% 100.0%
3648990 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.57 41.0 2.53e-01 95.6% 14.0%
3379364 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.56 41.0 3.47e-01 87.9% 47.6%
3817401 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.56 40.0 3.09e-01 95.6% 34.9%
3651414 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.56 40.0 3.40e-01 95.6% 46.9%
3705115 2485.1.1.51 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.56 48.0 3.53e-01 97.8% 50.6%
3667439 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.56 41.0 3.44e-01 98.9% 47.6%
3829090 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.55 40.0 3.41e-01 95.6% 48.6%
3809324 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.55 40.0 2.59e-01 95.6% 18.1%
3834065 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.55 39.0 3.79e-01 95.6% 66.0%
3812742 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.55 39.0 3.37e-01 95.6% 48.6%
3296927 109.4.1.1424 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, TPR_24 0.54 40.0 3.40e-01 95.6% 49.3%
3697175 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 3.24e-01 95.6% 44.1%
3647085 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.51 38.0 2.86e-01 86.8% 33.3%
3360811 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 39.0 3.15e-01 84.6% 44.8%