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NC_070975.1__YP_010672251.1__PQC36_gp124__00124
Bact-VirNC_070975.1__YP_010672251.1__PQC36_gp124__00124
Identity
- Accession:
- NC_070975 ↗
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Grimontviridae›
Privateervirus›
Proteus_phage_Vb_PmiP-P59
TaxID: 2754975
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-42
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23903.2 best | Phage_zn_bind_2 | 39.2 | 7.10e-10 | 100.0% | 90.7% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cngA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.70 | 49.0 | 5.14e-01 | 97.6% | 97.1% |
| 1u2kA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.60 | 41.0 | 2.98e-01 | 71.4% | 25.0% |
| 1i99I02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.59 | 45.0 | 3.42e-01 | 90.5% | 91.5% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 46.0 | 4.20e-01 | 97.6% | 70.1% |
| 2vhjA02 | 2.30.270.20 | Mainly Beta › Roll › duf1285 protein fold › | 0.55 | 38.0 | 3.52e-01 | 78.6% | 74.2% |
| 1vq8300 | 3.10.450.80 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 3.62e-01 | 100.0% | 80.4% |
| 4o4oA00 | 2.40.128.590 | Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain | 0.55 | 39.0 | 2.61e-01 | 81.0% | 20.8% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 39.0 | 3.08e-01 | 83.3% | 56.9% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.53 | 45.0 | 4.13e-01 | 100.0% | 80.4% |
| 1g29103 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 38.0 | 3.39e-01 | 95.2% | 52.3% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 38.0 | 3.45e-01 | 97.6% | 55.2% |
| 4tquS02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 35.0 | 3.19e-01 | 95.2% | 48.4% |
| 2jneA00 | 2.10.290.10 | Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like | 0.52 | 36.0 | 3.24e-01 | 100.0% | 47.9% |
| 2gxgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 2.63e-01 | 81.0% | 42.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 64.0 | 4.27e-01 | 100.0% | 22.0% |
| 5033134 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.82 | 71.0 | 7.00e-01 | 97.6% | 95.6% |
| 4025577 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.82 | 64.0 | 4.15e-01 | 100.0% | 20.0% |
| 4026161 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.81 | 64.0 | 4.54e-01 | 100.0% | 29.6% |
| 4421229 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.80 | 60.0 | 4.54e-01 | 95.2% | 34.0% |
| 4491893 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.77 | 58.0 | 4.39e-01 | 95.2% | 34.0% |
| 4452122 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.74 | 64.0 | 4.56e-01 | 100.0% | 33.3% |
| 3398775 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.73 | 58.0 | 5.97e-01 | 97.6% | 95.0% |
| 4027519 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.69 | 48.0 | 5.06e-01 | 97.6% | 91.4% |
| 4944389 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 55.0 | 4.92e-01 | 100.0% | 69.2% |
| 5061079 | 4294.1.1.13 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB | 0.64 | 45.0 | 4.48e-01 | 100.0% | 73.3% |
| 2541767 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.64 | 43.0 | 3.34e-01 | 71.4% | 92.8% |
| 4962856 | 375.1.1.349 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26408 | 0.63 | 49.0 | 5.00e-01 | 100.0% | 100.0% |
| 5051552 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 53.0 | 4.12e-01 | 100.0% | 43.0% |
| 3201717 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.62 | 50.0 | 3.44e-01 | 95.2% | 58.8% |
| 4984918 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.61 | 43.0 | 4.45e-01 | 95.2% | 94.3% |
| 5061081 | 375.1.1.83 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB | 0.61 | 43.0 | 4.19e-01 | 100.0% | 66.0% |
| 3584514 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 46.0 | 3.03e-01 | 90.5% | 59.5% |
| 3258369 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.58e-01 | 100.0% | 94.7% |
| 3811668 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.53e-01 | 97.6% | 90.0% |
| 3622097 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.59 | 46.0 | 3.00e-01 | 90.5% | 59.0% |
| 3936740 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.59 | 44.0 | 2.97e-01 | 88.1% | 64.2% |
| 4259234 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 47.0 | 4.58e-01 | 100.0% | 84.0% |
| 4928216 | 375.1.4.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain | 0.59 | 44.0 | 4.72e-01 | 92.9% | 97.1% |
| 3835809 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.59 | 43.0 | 4.35e-01 | 97.6% | 90.0% |
| 3199911 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.58 | 45.0 | 3.41e-01 | 97.6% | 85.6% |
| 5028776 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 42.0 | 4.12e-01 | 100.0% | 74.0% |
| 4963113 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 46.0 | 4.44e-01 | 100.0% | 90.0% |
| 3490290 | 3246.1.1.0 ↗ | few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins | 0.56 | 42.0 | 3.49e-01 | 100.0% | 42.2% |
| 4930970 | 375.1.1.338 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 | 0.56 | 44.0 | 4.19e-01 | 100.0% | 76.4% |
| 4929725 | 375.1.1.289 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 | 0.56 | 47.0 | 4.65e-01 | 100.0% | 93.3% |
| 3637989 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.55 | 42.0 | 3.47e-01 | 100.0% | 92.0% |
| 4944150 | 377.2.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins | 0.55 | 39.0 | 4.02e-01 | 95.2% | 97.1% |
| 4379563 | 375.1.1.289 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 | 0.55 | 46.0 | 4.52e-01 | 97.6% | 91.1% |
| 3524515 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.54 | 45.0 | 4.49e-01 | 100.0% | 95.5% |
| 3608441 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.54 | 43.0 | 2.54e-01 | 100.0% | 18.3% |
| 4928794 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 44.0 | 4.37e-01 | 100.0% | 93.3% |
| 4277113 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.52 | 37.0 | 3.06e-01 | 76.2% | 37.6% |
| 3726946 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.52 | 45.0 | 3.31e-01 | 100.0% | 42.6% |