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NC_070975.1__YP_010672253.1__PQC36_gp126__00126

Bact-Vir

NC_070975.1__YP_010672253.1__PQC36_gp126__00126

Identity

Accession:
NC_070975 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_Vb_PmiP-P59

TaxID: 2754975

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-67
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.87 81.0 6.11e-01 100.0% 51.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.85 79.0 6.42e-01 100.0% 57.3%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 73.0 6.08e-01 95.5% 58.3%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.83 75.0 6.50e-01 100.0% 94.0%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.81 73.0 5.65e-01 100.0% 69.7%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.81 70.0 6.51e-01 92.5% 76.5%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.79 68.0 5.56e-01 92.5% 74.6%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.79 71.0 6.88e-01 100.0% 97.3%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.79 69.0 6.00e-01 97.0% 63.7%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.78 68.0 6.32e-01 97.0% 77.1%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.77 68.0 5.77e-01 100.0% 65.5%
4asvA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.76 50.0 4.74e-01 73.1% 57.0%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.76 66.0 6.10e-01 97.0% 77.9%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.76 65.0 5.28e-01 92.5% 76.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 69.0 6.52e-01 100.0% 97.5%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 61.0 5.91e-01 97.0% 78.1%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 65.0 5.80e-01 95.5% 70.8%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.76 66.0 5.75e-01 97.0% 76.2%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 66.0 5.16e-01 98.5% 46.8%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.75 66.0 6.45e-01 100.0% 97.3%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.73 64.0 5.70e-01 97.0% 89.6%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 59.0 5.27e-01 89.6% 62.9%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 61.0 5.41e-01 94.0% 77.8%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 55.0 5.83e-01 94.0% 96.6%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 56.0 5.82e-01 83.6% 100.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 62.0 5.98e-01 100.0% 92.3%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.72 60.0 5.19e-01 95.5% 67.0%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 59.0 6.02e-01 92.5% 93.8%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.71 62.0 5.35e-01 97.0% 63.2%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.71 58.0 4.75e-01 88.1% 50.0%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 61.0 5.85e-01 98.5% 85.7%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 57.0 5.65e-01 89.6% 85.5%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 60.0 5.72e-01 98.5% 92.3%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.69 61.0 5.60e-01 100.0% 93.2%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 52.0 5.10e-01 89.6% 74.3%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 52.0 5.56e-01 88.1% 96.6%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.68 60.0 4.69e-01 100.0% 66.9%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.68 49.0 4.20e-01 79.1% 46.9%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 57.0 5.82e-01 95.5% 100.0%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.67 46.0 4.54e-01 95.5% 67.6%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 55.0 5.49e-01 94.0% 88.7%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 58.0 5.68e-01 100.0% 92.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.67 56.0 5.07e-01 92.5% 70.3%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.66 56.0 4.53e-01 100.0% 51.8%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 54.0 4.82e-01 95.5% 63.3%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 52.0 5.00e-01 88.1% 81.6%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 54.0 4.65e-01 94.0% 60.4%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.64 47.0 5.02e-01 82.1% 94.7%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 47.0 4.96e-01 83.6% 96.4%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 54.0 5.48e-01 94.0% 95.5%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.63 50.0 5.25e-01 86.6% 100.0%
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.54 43.0 4.24e-01 86.6% 95.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973899 5086.1.1.92 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.84 76.0 5.86e-01 100.0% 49.0%
3832264 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.80 71.0 4.21e-01 97.0% 13.9%
3240682 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 71.0 5.97e-01 97.0% 63.6%
3491738 632.8.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.80 69.0 6.06e-01 98.5% 64.6%
3172116 3922.1.1.317 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF30351 0.79 66.0 5.79e-01 89.6% 68.4%
3197615 3755.3.1.355 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 0.79 70.0 5.64e-01 97.0% 56.0%
3349371 3922.1.1.140 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Mlo 0.78 65.0 6.30e-01 89.6% 80.0%
3740547 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.78 69.0 5.89e-01 100.0% 74.5%
3962991 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 69.0 4.89e-01 97.0% 53.8%
3678791 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 69.0 4.79e-01 97.0% 62.9%
3678035 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 66.0 6.58e-01 98.5% 90.0%
3253283 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.78 66.0 5.89e-01 97.0% 66.3%
4335871 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.77 67.0 5.59e-01 97.0% 57.3%
3178900 192.2.1.30 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 0.77 69.0 5.26e-01 97.0% 48.3%
4937169 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.76 66.0 5.56e-01 97.0% 57.3%
5070735 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 64.0 4.70e-01 98.5% 36.0%
3382780 2006.1.1.8 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid 0.74 64.0 4.01e-01 97.0% 18.0%
3386373 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.74 63.0 6.38e-01 100.0% 96.9%
3461932 3922.1.1.189 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF630 0.74 64.0 5.69e-01 97.0% 74.7%
3375405 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.74 64.0 4.86e-01 97.0% 42.0%
5056477 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.73 64.0 5.87e-01 100.0% 78.9%
3167364 2004.1.1.481 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.72 62.0 3.75e-01 97.0% 15.0%
5049284 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.72 65.0 5.30e-01 98.5% 70.0%
4937014 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.72 63.0 3.93e-01 100.0% 25.0%
3718782 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.71 60.0 4.15e-01 98.5% 27.4%
3201381 192.8.1.139 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Fung_rhodopsin 0.71 59.0 5.78e-01 97.0% 88.0%
4959191 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.70 62.0 5.65e-01 100.0% 77.8%
4940229 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.70 61.0 3.85e-01 100.0% 21.9%
4349607 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.69 61.0 5.20e-01 98.5% 63.6%
3973636 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 59.0 5.66e-01 100.0% 88.0%
3623143 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.66 59.0 5.44e-01 97.0% 84.7%
5016166 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.66 57.0 4.19e-01 100.0% 36.8%
3791357 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 57.0 4.33e-01 100.0% 69.7%