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NC_070975.1__YP_010672260.1__PQC36_gp133__00133
Bact-VirNC_070975.1__YP_010672260.1__PQC36_gp133__00133
Identity
- Accession:
- NC_070975 ↗
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Grimontviridae›
Privateervirus›
Proteus_phage_Vb_PmiP-P59
TaxID: 2754975
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-88
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zs8A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.63 | 47.0 | 3.79e-01 | 78.2% | 45.6% |
| 1oo0A00 | 3.30.1560.10 | Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi | 0.60 | 44.0 | 3.73e-01 | 77.0% | 94.4% |
| 6ui4A02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 37.0 | 3.12e-01 | 89.7% | 38.7% |
| 3h09B02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.53 | 41.0 | 2.58e-01 | 85.1% | 67.8% |
| 1i7qA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.52 | 35.0 | 2.22e-01 | 70.1% | 40.2% |
| 2onfA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 35.0 | 3.02e-01 | 77.0% | 46.3% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.50 | 36.0 | 3.52e-01 | 73.6% | 81.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838791 | 101.1.1.32 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD | 0.76 | 48.0 | 4.16e-01 | 92.0% | 44.0% |
| 4978506 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.74 | 68.0 | 5.18e-01 | 100.0% | 45.3% |
| 4952130 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.74 | 68.0 | 4.88e-01 | 100.0% | 37.4% |
| 4976626 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.73 | 66.0 | 4.82e-01 | 100.0% | 38.2% |
| 4224431 | 101.1.1.32 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD | 0.67 | 47.0 | 4.07e-01 | 92.0% | 48.5% |
| 4180561 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.65 | 61.0 | 3.60e-01 | 98.9% | 90.4% |
| 3767125 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.63 | 51.0 | 3.45e-01 | 100.0% | 23.0% |
| 3418797 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 56.0 | 3.70e-01 | 97.7% | 90.0% |
| 3566423 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 47.0 | 3.48e-01 | 85.1% | 45.1% |
| 2816274 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.58 | 45.0 | 3.73e-01 | 86.2% | 45.6% |
| 3700393 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.58 | 44.0 | 3.28e-01 | 80.5% | 52.6% |
| 4202176 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.57 | 39.0 | 3.06e-01 | 70.1% | 67.9% |
| 3996291 | 4351.1.1.1 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 | 0.55 | 39.0 | 2.86e-01 | 72.4% | 64.1% |
| 4889389 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.53 | 37.0 | 3.69e-01 | 72.4% | 69.7% |
| 3951184 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.53 | 48.0 | 3.02e-01 | 100.0% | 88.7% |
| 3935776 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 35.0 | 2.33e-01 | 70.1% | 95.6% |
| 3398567 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.50 | 27.0 | 3.52e-01 | 70.1% | 100.0% |