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NC_070976.1__YP_010672296.1__PQC37_gp033__00033

Bact-Vir

NC_070976.1__YP_010672296.1__PQC37_gp033__00033

Identity

Accession:
NC_070976 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_3H10_20

TaxID: 2772448

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-66
PDB
Domain cluster: rep: MT188704.1__QIV65912.1__Cp1R7AA1_123__00096__D7-71
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.26e-01 100.0% 67.5%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.67 52.0 4.09e-01 85.0% 69.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.40e-01 100.0% 84.8%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 50.0 3.98e-01 85.0% 75.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.20e-01 100.0% 82.5%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 58.0 5.42e-01 100.0% 89.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.25e-01 100.0% 90.3%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 55.0 5.10e-01 100.0% 86.1%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 49.0 3.68e-01 86.7% 87.3%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 49.0 3.73e-01 88.3% 90.5%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 49.0 4.31e-01 88.3% 92.2%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 53.0 4.22e-01 100.0% 57.5%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 46.0 3.05e-01 81.7% 42.3%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 47.0 3.55e-01 85.0% 76.8%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 48.0 3.57e-01 86.7% 88.9%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.60 52.0 3.81e-01 100.0% 68.8%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 48.0 3.73e-01 90.0% 74.6%
1x6cA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 44.0 3.60e-01 81.7% 58.5%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.59 50.0 3.95e-01 98.3% 69.9%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 50.0 3.71e-01 100.0% 69.9%
3ehcB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 3.71e-01 90.0% 82.0%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.40e-01 90.0% 75.0%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 50.0 4.04e-01 100.0% 65.3%
4w78G00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 45.0 3.35e-01 86.7% 94.5%
1g19A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 3.11e-01 88.3% 83.5%
4hj1B03 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.03e-01 90.0% 91.1%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 45.0 3.31e-01 93.3% 59.6%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 2.93e-01 95.0% 24.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.61e-01 90.0% 84.2%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.56 45.0 3.84e-01 95.0% 92.7%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 41.0 3.50e-01 80.0% 58.0%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.45e-01 90.0% 79.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.83e-01 80.0% 64.0%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.55 43.0 3.02e-01 88.3% 98.1%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 3.64e-01 100.0% 66.7%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.31e-01 90.0% 74.0%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 39.0 2.83e-01 75.0% 47.2%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.54 44.0 3.58e-01 95.0% 81.0%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 42.0 3.46e-01 90.0% 83.1%
3iiiA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 38.0 2.54e-01 78.3% 47.2%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 42.0 3.47e-01 90.0% 86.4%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.53 37.0 3.33e-01 73.3% 83.3%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.53 40.0 3.07e-01 86.7% 68.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 37.0 3.73e-01 86.7% 74.6%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 38.0 2.76e-01 86.7% 94.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174822 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.75 68.0 6.16e-01 100.0% 90.0%
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 65.0 5.47e-01 100.0% 81.0%
3700454 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.19e-01 100.0% 91.3%
3597786 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.31e-01 100.0% 90.5%
3594365 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.69 56.0 3.47e-01 90.0% 30.3%
3741279 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.68 52.0 4.06e-01 85.0% 70.0%
3241557 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 51.0 5.28e-01 83.3% 98.2%
3927761 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.65 49.0 3.08e-01 86.7% 14.8%
1250095 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.65 51.0 3.81e-01 86.7% 86.8%
3792117 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 52.0 5.11e-01 95.0% 81.8%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.64 50.0 4.00e-01 86.7% 80.8%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.29e-01 100.0% 79.7%
3589630 243.4.1.4 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DUF1292 0.64 55.0 4.81e-01 95.0% 70.0%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.42e-01 100.0% 52.3%
3981157 222.1.1.14 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MC_hydratase 0.64 50.0 3.67e-01 86.7% 81.2%
4163046 222.1.1.14 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MC_hydratase 0.64 50.0 3.62e-01 86.7% 76.3%
4962346 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.63 50.0 3.73e-01 86.7% 89.3%
3393084 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 53.0 4.84e-01 96.7% 70.0%
3950922 243.1.1.80 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.63 50.0 4.05e-01 90.0% 85.0%
3962214 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.63 49.0 3.68e-01 86.7% 88.4%
3290304 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.63 49.0 3.67e-01 86.7% 87.7%
3580428 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.16e-01 93.3% 93.3%
3624657 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.61 53.0 4.37e-01 98.3% 73.6%
5060089 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 3.86e-01 88.3% 80.8%
3223708 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 49.0 3.94e-01 90.0% 89.2%
861 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.60 52.0 4.13e-01 100.0% 91.4%
3993916 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.60 52.0 4.32e-01 98.3% 74.5%
None — 0.59 45.0 2.93e-01 83.3% 81.1%
3587998 243.1.1.102 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28180 0.59 48.0 4.03e-01 90.0% 87.6%
3799750 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 49.0 3.42e-01 93.3% 40.0%
859 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.58 50.0 4.03e-01 100.0% 93.5%
3829832 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.58 44.0 3.71e-01 85.0% 93.6%
3858981 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 45.0 4.29e-01 85.0% 82.9%
3729692 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 47.0 3.52e-01 90.0% 92.9%
5030457 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.58 50.0 4.17e-01 98.3% 87.3%
3579141 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 48.0 3.05e-01 93.3% 25.8%
3936843 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 47.0 2.98e-01 93.3% 25.1%
4023051 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 47.0 2.97e-01 93.3% 28.3%
3830575 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.56 44.0 2.89e-01 90.0% 67.4%
3697945 4.1.1.312 ↗ beta barrels › SH3 › SH3 › SH3 › Med13_N 0.56 50.0 3.42e-01 100.0% 44.4%
3589048 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.56 45.0 3.56e-01 95.0% 74.3%
None — 0.56 43.0 2.81e-01 88.3% 67.9%
3925321 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 46.0 2.95e-01 93.3% 25.2%
None — 0.55 43.0 2.89e-01 90.0% 74.4%
3587107 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.55 45.0 2.87e-01 90.0% 44.6%
3828737 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 43.0 3.57e-01 90.0% 93.3%
4450485 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.55 42.0 3.06e-01 81.7% 72.9%
3430260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 44.0 2.86e-01 96.7% 49.4%
3936087 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 45.0 2.86e-01 93.3% 24.5%
3953439 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 42.0 4.05e-01 88.3% 78.6%
4941606 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.53 38.0 3.04e-01 80.0% 45.0%
2427411 11.1.1.141 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VERL 0.53 40.0 3.37e-01 83.3% 87.0%
3203065 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.52 45.0 3.53e-01 100.0% 56.3%
4485228 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 2.57e-01 90.0% 56.9%
3412515 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.52 42.0 2.47e-01 90.0% 17.7%
3262201 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 44.0 3.36e-01 98.3% 82.1%
2388236 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.51 39.0 2.79e-01 86.7% 92.3%
4008807 223.1.1.52 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE9 0.50 39.0 2.75e-01 91.7% 59.6%
4963860 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 39.0 3.26e-01 88.3% 71.3%
3867704 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 38.0 2.50e-01 86.7% 39.7%