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NC_070976.1__YP_010672359.1__PQC37_gp096__00096

Bact-Vir

NC_070976.1__YP_010672359.1__PQC37_gp096__00096

Identity

Accession:
NC_070976 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_3H10_20

TaxID: 2772448

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-69
PDB
Domain cluster: rep: NC_014636.1__YP_003969343.1__phiAS5_ORF0054__00054__D13-67
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 39.0 2.65e-01 95.3% 14.9%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 38.0 3.85e-01 84.4% 53.8%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 3.85e-01 82.8% 81.2%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 43.0 4.43e-01 100.0% 73.8%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 4.13e-01 87.5% 70.3%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.63 45.0 4.25e-01 90.6% 62.3%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 4.78e-01 82.8% 86.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 42.0 4.32e-01 87.5% 77.4%
2bw8A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.60 42.0 2.86e-01 73.4% 31.0%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.58e-01 87.5% 84.1%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 4.25e-01 100.0% 61.3%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.79e-01 90.6% 90.6%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 53.0 4.71e-01 100.0% 89.9%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 46.0 2.97e-01 89.1% 35.7%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 49.0 3.97e-01 98.4% 96.9%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.10e-01 84.4% 81.3%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.87e-01 76.6% 92.8%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.77e-01 87.5% 23.7%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 3.98e-01 100.0% 77.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 3.97e-01 84.4% 77.9%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.54 36.0 3.07e-01 92.2% 39.8%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.76e-01 90.6% 26.1%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.39e-01 85.9% 53.8%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.78e-01 100.0% 68.4%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 4.06e-01 84.4% 87.1%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 43.0 3.08e-01 95.3% 45.9%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.94e-01 100.0% 98.4%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.33e-01 98.4% 80.4%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 3.79e-01 100.0% 64.2%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 3.06e-01 100.0% 55.1%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.80e-01 100.0% 70.0%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.51 32.0 2.97e-01 95.3% 45.1%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 3.11e-01 100.0% 50.9%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 2.65e-01 98.4% 57.8%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.60e-01 89.1% 22.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3184493 2.1.1.59 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 0.68 51.0 3.97e-01 81.2% 79.3%
4065466 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.68 46.0 4.33e-01 95.3% 57.5%
4112791 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.67 41.0 4.58e-01 90.6% 80.0%
3308207 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.67 54.0 3.53e-01 87.5% 40.0%
4278911 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.66 41.0 4.58e-01 90.6% 80.0%
4679015 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.65 45.0 4.23e-01 98.4% 58.7%
3397845 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 3.78e-01 100.0% 46.7%
3924343 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.62 44.0 3.62e-01 84.4% 41.7%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.60 45.0 3.53e-01 82.8% 39.2%
3263180 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.19e-01 98.4% 56.4%
4427420 4.1.1.436 ↗ beta barrels › SH3 › SH3 › SH3 › PF29249 0.57 43.0 4.13e-01 85.9% 76.2%
4180663 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 41.0 3.33e-01 100.0% 40.0%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 3.83e-01 82.8% 68.9%
4029991 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.51e-01 89.1% 13.3%
3518065 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 47.0 3.76e-01 100.0% 56.3%
3906078 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 48.0 4.15e-01 100.0% 67.0%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.53 42.0 3.94e-01 85.9% 70.0%
4622871 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.98e-01 100.0% 77.1%
3623534 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.07e-01 96.9% 74.4%
3178444 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.53 46.0 3.64e-01 100.0% 55.0%
3791785 220.1.1.125 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.53 45.0 3.44e-01 98.4% 51.2%
5051526 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.52 43.0 2.88e-01 93.8% 23.9%
5058752 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.52 43.0 2.61e-01 89.1% 33.8%
3189222 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.52 39.0 2.37e-01 85.9% 11.2%
3721787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.57e-01 100.0% 62.4%
3617123 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.51 44.0 2.64e-01 98.4% 64.3%
None — 0.51 44.0 3.09e-01 100.0% 88.6%
4419746 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 38.0 2.32e-01 85.9% 11.2%
3436414 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.50 43.0 3.08e-01 100.0% 68.6%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 40.0 3.96e-01 89.1% 87.1%