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NC_070976.1__YP_010672363.1__PQC37_gp100__00100

Bact-Vir

NC_070976.1__YP_010672363.1__PQC37_gp100__00100

Identity

Accession:
NC_070976 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_3H10_20

TaxID: 2772448

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-61
PDB
Domain cluster: rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 74.0 6.36e-01 98.1% 82.7%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.79 53.0 4.37e-01 70.4% 88.3%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.77 69.0 6.17e-01 100.0% 98.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 67.0 6.28e-01 98.1% 98.5%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.76 66.0 5.96e-01 96.3% 74.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 6.19e-01 96.3% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 6.06e-01 96.3% 100.0%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 53.0 5.20e-01 77.8% 96.6%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.55e-01 92.6% 100.0%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 52.0 4.63e-01 77.8% 84.6%
3mhxB00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.70 57.0 5.10e-01 94.4% 93.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.63e-01 85.2% 100.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.56e-01 85.2% 96.0%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.69 60.0 4.13e-01 100.0% 81.4%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 4.65e-01 77.8% 89.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 50.0 4.80e-01 79.6% 90.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.26e-01 98.1% 97.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.15e-01 96.3% 92.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.30e-01 98.1% 96.9%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.62 49.0 3.80e-01 90.7% 78.9%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 52.0 4.41e-01 94.4% 75.6%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.13e-01 77.8% 86.8%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 47.0 4.06e-01 87.0% 94.4%
5yhhA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 54.0 3.64e-01 100.0% 75.4%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 44.0 2.82e-01 79.6% 16.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.74e-01 98.1% 40.9%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 49.0 3.42e-01 100.0% 36.1%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 52.0 4.01e-01 100.0% 84.9%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.57 42.0 2.94e-01 81.5% 77.0%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 41.0 2.72e-01 79.6% 24.0%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 46.0 3.68e-01 100.0% 55.6%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.57e-01 90.7% 25.3%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 40.0 3.20e-01 87.0% 57.5%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 42.0 3.58e-01 98.1% 87.0%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.36e-01 81.5% 88.5%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 38.0 2.42e-01 85.2% 23.0%
1x2jA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.50 38.0 2.52e-01 90.7% 30.3%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 37.0 3.25e-01 87.0% 74.7%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972823 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 69.0 7.14e-01 87.0% 98.0%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 67.0 7.00e-01 85.2% 98.0%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 68.0 6.80e-01 87.0% 92.7%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 68.0 7.04e-01 87.0% 98.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 67.0 6.73e-01 87.0% 92.7%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 67.0 6.69e-01 87.0% 89.1%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 67.0 6.95e-01 87.0% 98.0%
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 65.0 6.75e-01 85.2% 96.0%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 65.0 6.52e-01 85.2% 92.7%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.56e-01 87.0% 94.5%
4935681 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.59e-01 87.0% 92.7%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 64.0 6.44e-01 85.2% 92.7%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 66.0 6.57e-01 87.0% 96.4%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.52e-01 87.0% 92.7%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.72e-01 87.0% 100.0%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 65.0 6.45e-01 87.0% 96.4%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 65.0 6.48e-01 87.0% 89.1%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 64.0 6.39e-01 87.0% 90.9%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 64.0 6.21e-01 87.0% 88.3%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 64.0 6.42e-01 87.0% 87.3%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 68.0 6.39e-01 96.3% 98.5%
4930179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 63.0 6.28e-01 87.0% 92.7%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 69.0 6.49e-01 98.1% 100.0%
4957409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 62.0 6.39e-01 87.0% 94.0%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 64.0 6.08e-01 94.4% 96.9%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.77 64.0 5.99e-01 90.7% 92.3%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 68.0 6.43e-01 98.1% 100.0%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 67.0 6.28e-01 98.1% 98.5%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 6.17e-01 87.0% 85.5%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 68.0 6.36e-01 98.1% 100.0%
5030430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 5.81e-01 88.9% 87.7%
4369736 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.76 57.0 6.14e-01 83.3% 95.6%
3961546 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 63.0 5.90e-01 90.7% 90.8%
5050433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 58.0 6.31e-01 85.2% 100.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 67.0 6.27e-01 98.1% 100.0%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 61.0 5.78e-01 92.6% 98.5%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 57.0 5.39e-01 83.3% 93.8%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 61.0 5.79e-01 94.4% 100.0%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 65.0 6.15e-01 98.1% 96.9%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 60.0 5.71e-01 94.4% 96.9%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 6.10e-01 90.7% 96.4%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 60.0 5.73e-01 94.4% 96.9%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.73 61.0 5.77e-01 96.3% 98.5%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 6.06e-01 83.3% 100.0%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.72 60.0 5.60e-01 96.3% 92.9%
3947085 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 59.0 5.39e-01 90.7% 84.3%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.56e-01 100.0% 75.0%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 58.0 5.51e-01 90.7% 90.8%
5036647 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 58.0 5.35e-01 90.7% 84.3%
4031578 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.81e-01 90.7% 94.0%
5028692 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 58.0 5.44e-01 90.7% 90.8%
3839083 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 57.0 5.27e-01 90.7% 84.3%
4931202 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 4.51e-01 83.3% 97.8%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.69 57.0 5.36e-01 98.1% 94.3%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.68 57.0 5.11e-01 96.3% 81.2%
5075805 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.36e-01 85.2% 89.1%
3999179 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.66 51.0 4.48e-01 83.3% 97.5%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.63 54.0 5.29e-01 100.0% 91.7%
3385988 1.1.15.2 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC 0.62 53.0 3.50e-01 94.4% 73.5%
1685099 1.1.7.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.61 47.0 4.60e-01 90.7% 76.3%
4049734 1.16.1.5 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › Baseplate_J 0.61 50.0 4.50e-01 90.7% 68.0%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 54.0 4.98e-01 100.0% 98.6%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 52.0 4.88e-01 94.4% 100.0%
4038642 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 53.0 4.85e-01 100.0% 100.0%
3365075 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 49.0 3.26e-01 98.1% 34.8%
4000645 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.57 48.0 3.47e-01 100.0% 51.1%
5016620 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.57 43.0 2.91e-01 83.3% 98.0%
4174483 4004.1.1.3 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.55 41.0 3.11e-01 88.9% 69.1%
2077355 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 44.0 3.62e-01 98.1% 81.7%
4945251 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 44.0 3.71e-01 98.1% 74.0%
5020988 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 37.0 2.64e-01 77.8% 45.0%
3737433 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.51 44.0 2.86e-01 98.1% 77.3%