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NC_070976.1__YP_010672369.1__PQC37_gp129__00106

Bact-Vir

NC_070976.1__YP_010672369.1__PQC37_gp129__00106

Identity

Accession:
NC_070976 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_3H10_20

TaxID: 2772448

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-33_56-217
PDB
Domain cluster: rep: MF988720.1__ATN93531.1__X__00159__D10-212
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02342.24 best TerD 76.7 2.30e-21 97.9% 96.3%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.83 70.0 7.50e-01 93.2% 100.0%
2kxtA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.82 69.0 7.37e-01 89.1% 100.0%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 33.0 4.52e-01 82.3% 90.8%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 36.0 4.60e-01 81.8% 91.9%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 37.0 4.82e-01 84.9% 100.0%
5a2fA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 36.0 4.68e-01 83.3% 99.1%
2qz5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 38.0 4.28e-01 90.1% 77.0%
2jjsC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 37.0 4.59e-01 84.9% 97.4%
3v98B01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.62 37.0 4.49e-01 79.2% 94.0%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 4.54e-01 87.0% 93.3%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.61 39.0 4.69e-01 81.2% 100.0%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 33.0 3.94e-01 77.1% 77.0%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 33.0 4.38e-01 80.7% 98.0%
4lk4A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 33.0 4.26e-01 82.8% 94.3%
1loxA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.60 36.0 4.51e-01 79.7% 100.0%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.60 33.0 3.82e-01 85.9% 73.0%
2zkmX04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 36.0 4.27e-01 90.1% 86.9%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 34.0 4.42e-01 86.5% 99.1%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 35.0 4.26e-01 90.6% 90.3%
1dceA02 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.59 31.0 4.11e-01 89.1% 95.1%
2qsqB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 34.0 4.35e-01 85.4% 100.0%
3l4cA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 41.0 4.31e-01 90.1% 78.1%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.58 35.0 4.26e-01 79.2% 93.4%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 4.74e-01 77.1% 100.0%
4nreA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.58 36.0 4.43e-01 79.7% 100.0%
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 30.0 4.04e-01 83.3% 100.0%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 4.64e-01 78.6% 97.9%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 31.0 4.09e-01 86.5% 96.2%
2enqA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 40.0 4.35e-01 91.7% 86.7%
2yeqA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.56 30.0 3.87e-01 85.4% 89.9%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 36.0 4.27e-01 92.2% 94.0%
1mkfA01 2.60.40.1330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 4.05e-01 90.6% 71.9%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.55 38.0 4.39e-01 87.0% 96.4%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.55 40.0 4.43e-01 86.5% 94.0%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.55 31.0 3.90e-01 96.4% 92.9%
2a6vB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.79e-01 73.4% 100.0%
4ofqA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 4.44e-01 78.6% 100.0%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 37.0 4.06e-01 70.8% 95.5%
3hwjA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.53 36.0 4.05e-01 93.2% 89.3%
1d5rA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 33.0 3.94e-01 91.7% 92.5%
4jqrA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.52 38.0 3.62e-01 74.5% 98.6%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 4.18e-01 87.0% 94.2%
3v9oA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.50 28.0 3.36e-01 71.9% 81.8%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 4.03e-01 84.9% 92.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3279144 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.91 79.0 8.46e-01 91.7% 100.0%
4604058 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.90 82.0 8.48e-01 100.0% 99.4%
3286706 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.89 69.0 7.68e-01 99.0% 97.4%
4611950 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.89 86.0 8.66e-01 100.0% 99.5%
3278588 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.89 81.0 8.42e-01 95.3% 100.0%
3278842 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.89 70.0 7.81e-01 97.9% 100.0%
3278025 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.88 66.0 7.57e-01 88.5% 100.0%
4559658 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.87 81.0 7.92e-01 95.3% 100.0%
3248690 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.87 83.0 8.36e-01 98.4% 98.9%
4346854 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.87 81.0 8.17e-01 95.3% 100.0%
3287344 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.87 68.0 7.62e-01 99.5% 100.0%
3279096 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.83 77.0 7.93e-01 95.8% 100.0%
3592284 10.37.1.0 ↗ beta sandwiches › jelly-roll › TerD › TerD 0.83 76.0 7.87e-01 95.8% 100.0%
3719283 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.83 77.0 7.72e-01 95.3% 100.0%
3709448 10.37.1.0 ↗ beta sandwiches › jelly-roll › TerD › TerD 0.83 74.0 7.01e-01 91.7% 100.0%
1116431 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.83 70.0 7.44e-01 91.1% 97.7%
3608293 10.37.1.0 ↗ beta sandwiches › jelly-roll › TerD › TerD 0.83 80.0 7.70e-01 100.0% 95.2%
3282019 10.37.1.0 ↗ beta sandwiches › jelly-roll › TerD › TerD 0.79 72.0 7.41e-01 99.5% 99.5%
4641771 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.69 48.0 5.65e-01 74.5% 100.0%
3907934 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 37.0 4.74e-01 84.4% 99.1%
3626190 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.63 37.0 4.05e-01 90.6% 68.8%
3266223 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.63 36.0 4.28e-01 82.8% 81.2%
3401798 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.61 39.0 4.69e-01 79.7% 100.0%
3265727 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.60 36.0 4.05e-01 83.3% 74.7%
3261102 11.2.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK-C2 0.60 42.0 4.55e-01 90.6% 85.0%
4030690 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 33.0 4.17e-01 89.6% 93.6%
3935284 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 39.0 3.97e-01 90.6% 68.9%
3230431 11.2.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK-C2 0.57 42.0 4.21e-01 90.6% 73.3%
3924052 11.2.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK-C2 0.57 41.0 4.22e-01 90.6% 76.8%
3270665 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.56 35.0 4.30e-01 71.4% 96.0%
4000544 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 43.0 4.59e-01 90.1% 90.5%
4468775 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.56 30.0 3.99e-01 87.0% 98.0%
3345756 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 38.0 3.39e-01 89.6% 48.7%
4114695 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.54 39.0 3.48e-01 72.4% 88.0%
3357481 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 40.0 2.91e-01 76.6% 41.8%
3268650 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 38.0 4.37e-01 87.0% 98.6%
3344805 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 39.0 3.79e-01 90.1% 66.5%
3370179 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.54 39.0 3.48e-01 73.4% 86.3%
3519899 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 36.0 4.11e-01 91.7% 92.1%
3263670 11.2.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DOCK-C2 0.53 39.0 4.15e-01 90.6% 84.1%
3447952 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 39.0 3.49e-01 76.0% 97.1%
3802688 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 37.0 4.04e-01 91.1% 84.4%
3322400 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 35.0 2.88e-01 71.4% 35.3%
3203736 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 36.0 3.84e-01 71.9% 99.4%
2387830 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 4.37e-01 84.4% 99.3%
4929204 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 33.0 3.95e-01 87.5% 100.0%
4000830 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.51 31.0 3.79e-01 83.3% 99.1%
4887934 10.3.1.8 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › Bc2l-C_N 0.50 34.0 3.88e-01 87.0% 94.2%