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NC_070976.1__YP_010672382.1__PQC37_gp116__00119

Bact-Vir

NC_070976.1__YP_010672382.1__PQC37_gp116__00119

Identity

Accession:
NC_070976 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Privateervirus› Proteus_phage_3H10_20

TaxID: 2772448

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.68 60.0 5.05e-01 100.0% 99.1%
1x31D00 3.30.2270.10 Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily 0.67 43.0 3.73e-01 70.5% 42.9%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.63 54.0 4.77e-01 100.0% 67.7%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 44.0 2.73e-01 73.8% 20.8%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 43.0 2.97e-01 73.8% 51.3%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.60 47.0 3.62e-01 86.9% 37.9%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.58 45.0 4.33e-01 85.2% 81.2%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.29e-01 73.8% 65.1%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 45.0 3.89e-01 93.4% 71.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.54 45.0 4.03e-01 100.0% 83.2%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.54 37.0 3.29e-01 80.3% 50.0%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 2.73e-01 100.0% 36.1%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 43.0 4.35e-01 95.1% 85.5%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 43.0 3.76e-01 85.2% 82.0%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 37.0 2.53e-01 72.1% 27.6%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.46e-01 83.6% 84.6%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.31e-01 100.0% 80.8%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.56e-01 77.0% 81.7%
4q3kB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 35.0 2.42e-01 72.1% 26.9%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 35.0 2.05e-01 70.5% 10.9%
2kzxA00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.51 34.0 2.73e-01 70.5% 33.6%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.79e-01 86.9% 82.9%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.50 43.0 3.37e-01 100.0% 64.6%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.50 36.0 2.92e-01 80.3% 54.0%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 41.0 3.82e-01 95.1% 82.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4626020 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.79 52.0 4.78e-01 88.5% 54.7%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 68.0 5.81e-01 100.0% 65.3%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.28e-01 100.0% 53.6%
3386501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 54.0 5.02e-01 78.7% 97.3%
3326109 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.69 48.0 3.71e-01 72.1% 65.4%
3239884 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 47.0 3.96e-01 73.8% 61.9%
3598220 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 59.0 4.41e-01 100.0% 78.6%
3744344 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.62 43.0 3.50e-01 72.1% 41.7%
4606362 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 44.0 3.97e-01 88.5% 55.3%
3916526 719.1.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.60 44.0 3.56e-01 80.3% 73.1%
3611119 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.58 44.0 3.49e-01 85.2% 97.8%
None — 0.58 41.0 2.62e-01 77.0% 26.6%
3990341 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 46.0 3.94e-01 93.4% 78.1%
3257350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.24e-01 83.6% 97.8%
4401572 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.56 40.0 3.65e-01 91.8% 55.3%
3493131 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 40.0 3.47e-01 78.7% 66.0%
5038934 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.56 37.0 3.78e-01 85.2% 70.7%
3608215 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 48.0 3.58e-01 96.7% 44.4%
3565552 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 45.0 3.77e-01 100.0% 72.8%
3994922 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 37.0 3.14e-01 70.5% 82.9%
3731834 7579.1.1.127 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_3 0.54 40.0 2.55e-01 78.7% 31.0%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.54 39.0 3.29e-01 78.7% 46.3%
5075930 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.54 36.0 2.88e-01 70.5% 32.8%
4545659 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 44.0 4.14e-01 91.8% 84.0%
3233672 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 37.0 3.17e-01 88.5% 44.0%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.53 43.0 4.09e-01 93.4% 76.0%
3672898 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 42.0 3.42e-01 91.8% 95.2%
4467977 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.52 43.0 3.69e-01 93.4% 77.1%
3216394 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.52 47.0 2.92e-01 100.0% 36.6%
3735697 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.52 44.0 4.07e-01 95.1% 80.0%
3243588 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.52 40.0 2.65e-01 91.8% 30.5%
5041112 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 39.0 3.84e-01 86.9% 77.1%
3814337 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.70e-01 98.4% 84.8%
3705073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.76e-01 98.4% 71.0%
3191948 222.1.1.10 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.50 40.0 3.23e-01 88.5% 62.5%