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NC_070979.1__YP_010672716.1__PQC40_gp048__00048

Bact-Vir

NC_070979.1__YP_010672716.1__PQC40_gp048__00048

Identity

Accession:
NC_070979 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Nieuwekanaalvirus› Escherichia_phage_EP335

TaxID: 2070199

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: rep: KT001915.1__AKU43889.1__CPT_Merlin243__00243__D4-58
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25744.2 best T4_Y13H 57.0 2.10e-15 100.0% 88.5%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 63.0 5.55e-01 98.2% 98.8%
3kptA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 56.0 4.50e-01 91.1% 44.3%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 61.0 5.10e-01 100.0% 94.9%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.70 59.0 4.80e-01 96.4% 55.6%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.66 54.0 4.91e-01 92.9% 98.7%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 56.0 4.71e-01 100.0% 92.9%
2qv6A01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.65 55.0 4.30e-01 98.2% 72.7%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 46.0 3.86e-01 94.6% 43.4%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 4.59e-01 96.4% 100.0%
2nydA02 2.20.28.300 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 43.0 4.76e-01 96.4% 100.0%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 4.46e-01 92.9% 97.6%
3pf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 50.0 3.83e-01 94.6% 54.2%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 4.55e-01 94.6% 100.0%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.60 46.0 3.86e-01 83.9% 100.0%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.59 45.0 3.45e-01 100.0% 33.1%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 3.94e-01 100.0% 52.0%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 44.0 3.40e-01 85.7% 86.8%
4tweA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.58 47.0 3.22e-01 94.6% 99.6%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.75e-01 96.4% 99.1%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.99e-01 98.2% 92.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 48.0 3.92e-01 100.0% 58.6%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 3.98e-01 96.4% 96.8%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.88e-01 100.0% 53.3%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.61e-01 100.0% 55.1%
2byeA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 45.0 3.86e-01 98.2% 57.4%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.62e-01 89.3% 66.3%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.61e-01 96.4% 100.0%
4w9rB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 2.95e-01 98.2% 32.2%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.56e-01 100.0% 52.5%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.50e-01 100.0% 52.6%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 42.0 4.18e-01 98.2% 91.8%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.60e-01 100.0% 99.1%
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 41.0 3.64e-01 100.0% 85.7%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 38.0 3.50e-01 96.4% 57.5%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 42.0 3.96e-01 96.4% 87.3%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.20e-01 94.6% 98.5%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.94e-01 98.2% 42.1%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.51 42.0 3.39e-01 96.4% 54.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4289160 3397.1.1.1 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 › Tic22 0.90 84.0 7.15e-01 100.0% 75.3%
4241788 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.77 65.0 4.68e-01 91.1% 94.0%
4095920 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.76 65.0 5.01e-01 92.9% 100.0%
3718180 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.75 65.0 5.40e-01 94.6% 92.6%
3628875 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.74 62.0 5.22e-01 92.9% 100.0%
5053381 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.74 64.0 4.61e-01 94.6% 96.0%
1178819 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.72 56.0 4.48e-01 91.1% 43.9%
5039662 304.48.1.112 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › SatD 0.68 59.0 4.57e-01 100.0% 70.0%
5029123 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 57.0 4.88e-01 94.6% 94.4%
5028999 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 58.0 4.82e-01 100.0% 88.0%
5056140 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 56.0 4.86e-01 98.2% 96.7%
5055379 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 47.0 4.23e-01 91.1% 55.0%
5033229 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 54.0 4.67e-01 98.2% 94.4%
4959201 815.1.1.1 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 0.62 45.0 3.87e-01 92.9% 46.3%
5040129 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.62 51.0 4.40e-01 96.4% 96.8%
3952771 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 53.0 4.32e-01 98.2% 67.6%
3963369 4222.1.1.2 ↗ a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.59 46.0 3.92e-01 87.5% 60.0%
4938962 11.1.1.1410 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.58 47.0 3.98e-01 91.1% 54.7%
3666791 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 43.0 4.43e-01 87.5% 100.0%
4498351 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.56 44.0 3.59e-01 94.6% 98.3%
166071 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 46.0 3.98e-01 96.4% 96.8%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 42.0 4.33e-01 92.9% 100.0%
3312666 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 43.0 4.11e-01 92.9% 75.7%
3599190 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 43.0 3.00e-01 89.3% 60.0%
3284181 11.1.1.691 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1416 0.54 37.0 3.29e-01 91.1% 46.7%
3214302 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.64e-01 100.0% 63.5%
3622256 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 39.0 2.93e-01 78.6% 58.1%
4433786 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.53 43.0 3.86e-01 98.2% 91.8%
None — 0.52 37.0 2.31e-01 78.6% 47.2%
3782920 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.52 38.0 2.99e-01 82.1% 99.3%
3784545 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.14e-01 94.6% 53.1%
3879253 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.29e-01 100.0% 60.0%