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NC_070979.1__YP_010672744.1__PQC40_gp076__00076

Bact-Vir

NC_070979.1__YP_010672744.1__PQC40_gp076__00076

Identity

Accession:
NC_070979 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Nieuwekanaalvirus› Escherichia_phage_EP335

TaxID: 2070199

Cluster

View cluster (31 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.79 57.0 5.13e-01 90.9% 56.0%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.72 54.0 4.70e-01 90.9% 53.7%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.72 54.0 4.64e-01 92.7% 51.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.22e-01 100.0% 70.1%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.67 51.0 3.69e-01 85.5% 57.6%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.72e-01 100.0% 84.0%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 46.0 4.93e-01 89.1% 91.5%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.80e-01 100.0% 79.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.63 52.0 3.69e-01 92.7% 65.1%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.61 52.0 4.55e-01 100.0% 80.7%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 53.0 3.91e-01 100.0% 44.2%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.59 45.0 3.99e-01 83.6% 57.3%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 50.0 4.11e-01 100.0% 98.1%
1xf1A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.59 49.0 3.75e-01 100.0% 83.1%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 3.79e-01 100.0% 67.4%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.36e-01 76.4% 99.0%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 50.0 4.03e-01 100.0% 78.6%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.79e-01 96.4% 96.6%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.57 44.0 4.09e-01 98.2% 64.9%
2re3B03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 32.0 3.92e-01 90.9% 96.7%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.31e-01 78.2% 94.4%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.52e-01 100.0% 100.0%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 44.0 4.64e-01 100.0% 98.0%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.55 42.0 4.01e-01 85.5% 69.2%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.00e-01 100.0% 71.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.34e-01 100.0% 86.1%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.25e-01 100.0% 27.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.35e-01 100.0% 92.6%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.32e-01 81.8% 94.4%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.31e-01 83.6% 93.9%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.17e-01 96.4% 86.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 47.0 3.37e-01 100.0% 45.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 47.0 3.84e-01 100.0% 64.8%
2qcsB02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 38.0 3.11e-01 100.0% 36.0%
2esvD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.24e-01 81.8% 95.4%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.07e-01 94.5% 75.7%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 4.32e-01 100.0% 96.7%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 43.0 3.27e-01 100.0% 50.6%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 37.0 3.51e-01 76.4% 62.3%
4x83A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.24e-01 81.8% 82.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.00e-01 90.9% 81.4%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 42.0 3.34e-01 98.2% 89.4%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 41.0 4.27e-01 100.0% 98.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 4.18e-01 100.0% 86.2%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.51 38.0 3.26e-01 100.0% 46.5%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.14e-01 100.0% 31.8%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.51 45.0 3.50e-01 100.0% 70.2%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 45.0 4.49e-01 100.0% 98.2%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.51 42.0 2.72e-01 100.0% 37.3%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.50 42.0 3.32e-01 96.4% 78.3%
4gnrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 41.0 2.95e-01 87.3% 92.5%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.74e-01 100.0% 81.5%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.49e-01 100.0% 78.1%
4272564 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.69 62.0 4.92e-01 100.0% 57.4%
5024227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.71e-01 100.0% 87.3%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.68 61.0 4.81e-01 100.0% 58.2%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.28e-01 98.2% 89.1%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 57.0 5.20e-01 100.0% 72.0%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 58.0 4.73e-01 100.0% 59.0%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.76e-01 100.0% 62.7%
3587259 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.65 56.0 4.85e-01 100.0% 63.3%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 53.0 5.06e-01 100.0% 76.9%
4554867 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 53.0 5.06e-01 100.0% 78.5%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.65 55.0 4.47e-01 100.0% 52.7%
4302391 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.64 52.0 4.94e-01 94.5% 75.4%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 53.0 5.17e-01 100.0% 85.0%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 51.0 4.82e-01 100.0% 72.9%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 54.0 4.67e-01 100.0% 62.2%
4987025 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.63 56.0 3.51e-01 98.2% 71.9%
7765 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.63 52.0 4.01e-01 92.7% 88.9%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 51.0 4.65e-01 100.0% 66.7%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.63 54.0 4.75e-01 100.0% 67.1%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 53.0 4.44e-01 100.0% 56.0%
4209798 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.62 54.0 4.72e-01 100.0% 72.9%
1758949 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.62 52.0 3.98e-01 96.4% 80.1%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 53.0 4.51e-01 100.0% 58.9%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.62 53.0 4.69e-01 100.0% 65.9%
4970510 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.61 50.0 4.82e-01 100.0% 81.5%
3602511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.42e-01 100.0% 70.0%
3951704 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.60 50.0 4.57e-01 89.1% 90.0%
3821398 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 49.0 3.21e-01 100.0% 95.7%
3251948 375.1.3.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.59 45.0 4.41e-01 100.0% 75.0%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.59 49.0 4.61e-01 98.2% 77.1%
4932189 4076.2.1.6 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF1922 0.58 44.0 4.10e-01 100.0% 64.3%
4263982 375.1.1.302 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MRNIP 0.58 43.0 4.33e-01 98.2% 80.0%
4475754 4076.2.1.5 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MRNIP 0.58 43.0 4.06e-01 98.2% 67.7%
4942805 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.57 51.0 4.43e-01 100.0% 65.9%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 47.0 4.35e-01 100.0% 70.7%
4487949 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.57 49.0 3.87e-01 100.0% 75.8%
3187813 220.1.1.204 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_24 0.56 46.0 3.77e-01 100.0% 73.0%
1162196 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 43.0 3.39e-01 83.6% 89.6%
5006274 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 47.0 3.57e-01 100.0% 38.6%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.15e-01 92.7% 75.4%
3705932 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.67e-01 90.9% 14.7%
3197429 244.2.1.10 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.54 41.0 2.64e-01 87.3% 40.6%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 45.0 4.44e-01 98.2% 88.3%
3974490 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.03e-01 100.0% 77.5%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 44.0 3.72e-01 100.0% 80.0%
4343890 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 4.00e-01 81.8% 100.0%
3794190 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 2.75e-01 83.6% 75.8%
2663669 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.53 43.0 3.26e-01 100.0% 50.0%
5030111 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.53 45.0 4.34e-01 98.2% 82.8%
4956474 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.52 45.0 4.22e-01 100.0% 85.7%
3484290 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 2.96e-01 85.5% 92.9%
4568780 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 42.0 4.23e-01 98.2% 98.2%
3754532 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 39.0 3.15e-01 83.6% 95.6%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.16e-01 98.2% 90.0%
4934222 375.1.1.12 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e 0.51 44.0 4.09e-01 98.2% 77.9%
1102560 10.1.1.44 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH131_N 0.50 45.0 2.90e-01 100.0% 28.9%
5019693 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.50 41.0 4.31e-01 96.4% 100.0%
3769733 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 38.0 2.99e-01 81.8% 85.8%
5067513 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 43.0 4.34e-01 96.4% 98.2%