←Back to structures

NC_070981.1__YP_010672912.1__PQC42_gp001__00001

Bact-Vir

NC_070981.1__YP_010672912.1__PQC42_gp001__00001

Identity

Accession:
NC_070981 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Suseptimavirus› Escherichia_phage_EK010

TaxID: 2742112

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-130
PDB
Domain cluster: rep: OR437326.1__WMI32790.1__RAB56_00224__00214__D8-102
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 27.0 3.65e-01 83.6% 81.2%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.60 40.0 4.71e-01 70.3% 98.9%
1f1eA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.58 40.0 3.83e-01 71.1% 100.0%
7lb8B02 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.55 45.0 3.35e-01 86.7% 71.0%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 25.0 3.31e-01 83.6% 83.3%
3bg2A02 1.10.3550.10 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like 0.52 38.0 4.02e-01 75.8% 94.6%
3c02A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.51 42.0 3.53e-01 93.8% 74.4%
1rc2A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.50 40.0 3.43e-01 89.8% 73.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3782009 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 39.0 3.30e-01 93.8% 41.4%
3283710 5049.1.1.1 ↗ alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp 0.57 51.0 3.52e-01 100.0% 70.8%
4969476 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.57 40.0 3.19e-01 72.7% 43.5%
4200884 5049.1.1.1 ↗ alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp 0.53 47.0 3.34e-01 100.0% 74.5%
D2 high residues 163-285
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 63.0 5.62e-01 100.0% 71.4%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.69 56.0 5.94e-01 100.0% 98.2%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 35.0 4.74e-01 93.5% 100.0%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 5.45e-01 95.9% 79.6%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 31.0 4.48e-01 91.9% 98.2%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.66 58.0 5.10e-01 94.3% 95.5%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 60.0 5.20e-01 100.0% 84.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 30.0 4.28e-01 87.8% 100.0%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.63 57.0 5.15e-01 100.0% 76.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 50.0 4.84e-01 95.9% 76.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 33.0 4.35e-01 94.3% 100.0%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.61 54.0 4.35e-01 99.2% 98.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 36.0 3.89e-01 100.0% 68.3%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 54.0 4.99e-01 99.2% 98.1%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.60 49.0 4.20e-01 89.4% 100.0%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.60 50.0 4.51e-01 91.9% 98.2%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.59 43.0 4.11e-01 92.7% 65.7%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 52.0 4.97e-01 100.0% 88.1%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 4.62e-01 78.9% 100.0%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 50.0 4.80e-01 100.0% 88.2%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.56 50.0 4.55e-01 100.0% 74.7%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 49.0 4.66e-01 100.0% 83.0%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.56 43.0 4.10e-01 82.1% 70.0%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.55 46.0 3.77e-01 92.7% 81.8%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 49.0 4.56e-01 100.0% 88.2%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 48.0 3.52e-01 97.6% 98.5%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 48.0 4.29e-01 99.2% 92.3%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 37.0 3.61e-01 70.7% 97.1%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 3.72e-01 74.8% 87.4%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 41.0 3.92e-01 78.0% 81.3%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.53 42.0 3.72e-01 86.2% 98.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 4.27e-01 100.0% 84.8%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 44.0 3.48e-01 92.7% 86.1%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 47.0 3.58e-01 100.0% 99.3%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 47.0 3.50e-01 99.2% 99.4%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 47.0 3.51e-01 100.0% 99.4%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 45.0 3.27e-01 96.7% 73.9%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 46.0 3.62e-01 99.2% 93.5%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 42.0 4.16e-01 95.9% 84.7%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 41.0 3.91e-01 87.0% 86.8%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.50 38.0 2.98e-01 78.9% 52.0%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.50 42.0 3.07e-01 93.5% 62.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3060391 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.70 60.0 6.17e-01 100.0% 99.1%
4793345 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.69 57.0 6.01e-01 98.4% 100.0%
3065351 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.65 60.0 5.93e-01 100.0% 98.4%
4100001 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 58.0 5.11e-01 100.0% 66.7%
3407007 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 56.0 5.11e-01 100.0% 71.2%
3691111 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 56.0 5.05e-01 100.0% 70.5%
3498714 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.59 40.0 4.19e-01 98.4% 74.8%
4956163 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.59 52.0 4.65e-01 100.0% 93.9%
1710650 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.57 43.0 4.72e-01 82.1% 96.1%
3194607 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.56 45.0 3.15e-01 87.8% 96.3%
3965134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 45.0 4.70e-01 89.4% 92.2%
4983936 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.56 44.0 4.25e-01 82.1% 80.0%
3351841 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.54 41.0 4.09e-01 94.3% 76.7%
4186209 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 49.0 3.78e-01 100.0% 94.8%
3973457 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.53 39.0 2.61e-01 74.8% 32.9%
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 44.0 4.09e-01 88.6% 72.3%
4659430 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 48.0 3.67e-01 100.0% 92.3%
4403655 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 42.0 2.90e-01 86.2% 92.4%
3788774 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.52 41.0 3.88e-01 100.0% 70.3%
3805100 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.52 38.0 3.34e-01 76.4% 66.0%
4466055 12.3.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.52 47.0 3.53e-01 100.0% 94.3%
139039 12.3.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.52 47.0 3.47e-01 99.2% 96.2%
5071561 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.52 46.0 4.18e-01 100.0% 88.2%
3963929 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 47.0 3.55e-01 99.2% 92.8%
3607354 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 44.0 4.30e-01 99.2% 83.3%
3981154 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.52 43.0 2.90e-01 88.6% 96.1%
1385068 12.3.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.51 46.0 3.45e-01 100.0% 95.6%
3794870 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.51 46.0 4.21e-01 97.6% 79.4%
3979477 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.51 42.0 2.85e-01 88.6% 98.0%
4992003 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.51 44.0 4.31e-01 100.0% 88.9%
4963369 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 44.0 3.98e-01 95.9% 100.0%
5065385 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.50 45.0 4.09e-01 100.0% 93.3%
6334 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.50 45.0 4.26e-01 100.0% 88.4%
5010771 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 45.0 3.62e-01 99.2% 88.7%