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NC_070983.1__YP_010673223.1__PQC44_gp051__00051

Bact-Vir

NC_070983.1__YP_010673223.1__PQC44_gp051__00051

Identity

Accession:
NC_070983 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Suseptimavirus› Escherichia_phage_IME267

TaxID: 2860374

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-74
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e1qC01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.69 40.0 3.66e-01 75.4% 43.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.67 44.0 4.51e-01 71.0% 69.7%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 44.0 3.58e-01 75.4% 35.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.67 56.0 4.26e-01 100.0% 38.9%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 45.0 4.38e-01 72.5% 80.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.64 54.0 4.90e-01 100.0% 69.1%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.63 44.0 4.50e-01 72.5% 93.8%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.63 41.0 4.58e-01 100.0% 85.5%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 45.0 4.24e-01 100.0% 62.8%
3gd0A01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.62 54.0 3.70e-01 100.0% 86.0%
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.61 44.0 3.73e-01 76.8% 59.1%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 50.0 3.94e-01 95.7% 42.1%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 46.0 4.04e-01 97.1% 56.0%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.17e-01 100.0% 56.5%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.59 44.0 3.97e-01 100.0% 56.4%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 39.0 3.17e-01 85.5% 37.3%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.58 42.0 3.60e-01 76.8% 50.4%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.58 43.0 3.08e-01 100.0% 24.9%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.59e-01 100.0% 45.5%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 41.0 3.35e-01 88.4% 40.0%
4bwcA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.57 38.0 4.22e-01 100.0% 90.6%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 47.0 3.83e-01 92.8% 76.5%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.56 50.0 4.11e-01 98.6% 72.1%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.17e-01 94.2% 35.4%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.55 43.0 3.76e-01 100.0% 55.7%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 48.0 4.04e-01 98.6% 93.3%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 3.19e-01 100.0% 35.6%
3fbxA00 3.60.60.30 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › 0.55 43.0 2.53e-01 84.1% 99.6%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 47.0 4.59e-01 100.0% 86.8%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 47.0 3.89e-01 100.0% 77.1%
3iwzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 3.11e-01 73.9% 51.5%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 46.0 3.45e-01 98.6% 61.2%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.60e-01 91.3% 74.4%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.20e-01 85.5% 74.7%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 38.0 3.17e-01 94.2% 41.1%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 46.0 3.74e-01 100.0% 87.0%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 3.19e-01 72.5% 50.0%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 43.0 3.53e-01 94.2% 75.7%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 44.0 3.73e-01 97.1% 58.2%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.66e-01 100.0% 88.1%
1uyvA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 44.0 3.03e-01 100.0% 31.7%
5zspA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 38.0 3.23e-01 84.1% 78.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.64e-01 100.0% 72.2%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 38.0 3.48e-01 84.1% 60.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 41.0 3.59e-01 91.3% 87.2%
2pqqA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 2.86e-01 94.2% 35.4%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 2.89e-01 95.7% 36.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595896 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.73 42.0 5.06e-01 72.5% 88.9%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.66 57.0 5.61e-01 100.0% 88.0%
5049794 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.65 46.0 3.62e-01 73.9% 40.0%
3399926 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.65 45.0 3.86e-01 73.9% 46.1%
3218957 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.64 41.0 3.53e-01 71.0% 40.0%
3340123 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.63 44.0 4.03e-01 72.5% 57.8%
3502194 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.63 39.0 3.58e-01 72.5% 45.3%
5078886 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 52.0 4.44e-01 89.9% 70.9%
3484186 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 38.0 3.26e-01 72.5% 36.5%
3504586 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 44.0 3.39e-01 73.9% 34.2%
4030365 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.62 46.0 4.04e-01 98.6% 52.4%
3653833 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.61 40.0 4.02e-01 100.0% 65.7%
3595426 228.1.1.0 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C 0.61 44.0 3.81e-01 76.8% 56.4%
3283196 303.1.1.3 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.61 40.0 3.64e-01 85.5% 49.5%
4941241 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 39.0 4.33e-01 84.1% 92.0%
4979507 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 41.0 3.24e-01 72.5% 37.6%
3390562 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 41.0 4.15e-01 73.9% 72.9%
3765624 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 39.0 3.82e-01 85.5% 60.0%
4944072 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.59 42.0 3.68e-01 75.4% 51.0%
3389022 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 35.0 3.84e-01 71.0% 78.0%
4022609 101.1.2.115 ↗ alpha arrays › HTH › HTH › winged helix domain › CDC27 0.59 40.0 3.20e-01 71.0% 48.3%
4854090 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.59 41.0 3.24e-01 73.9% 35.8%
4956457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 4.42e-01 81.2% 98.0%
4982792 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.58 46.0 3.47e-01 85.5% 48.8%
2813619 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.58 51.0 3.47e-01 100.0% 32.6%
4983067 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 38.0 4.30e-01 71.0% 94.0%
4932189 4076.2.1.6 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF1922 0.57 38.0 3.86e-01 73.9% 68.6%
5062730 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.57 45.0 4.34e-01 94.2% 75.0%
4956150 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 39.0 4.27e-01 71.0% 92.7%
3738951 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.57 50.0 4.32e-01 100.0% 66.4%
3615721 3529.1.1.3 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_3 0.56 39.0 3.49e-01 72.5% 58.9%
4184822 2002.1.1.69 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase 0.55 47.0 2.76e-01 98.6% 50.2%
5052959 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 4.15e-01 72.5% 90.9%
3507461 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.40e-01 81.2% 98.2%
3684103 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 43.0 2.57e-01 89.9% 13.1%
3917191 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 40.0 4.40e-01 85.5% 98.2%
5048625 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.54 44.0 3.99e-01 92.8% 98.0%
3729046 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 39.0 2.50e-01 85.5% 69.0%
5059646 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 41.0 3.88e-01 94.2% 70.6%
3590261 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.53 47.0 4.73e-01 100.0% 100.0%
4124693 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 2.99e-01 73.9% 51.1%
3923043 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.52 43.0 3.94e-01 98.6% 93.0%
3913606 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.76e-01 98.6% 67.8%
3999276 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 44.0 3.30e-01 100.0% 37.8%
3766042 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 35.0 3.11e-01 73.9% 70.9%
4567075 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.50 43.0 2.92e-01 100.0% 32.3%
3600597 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.50 34.0 2.73e-01 95.7% 32.7%
3404684 10.12.1.84 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom 0.50 43.0 3.14e-01 100.0% 45.7%