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NC_070986.1__YP_010673542.1__PQC47_gp007__00007

Bact-Vir

NC_070986.1__YP_010673542.1__PQC47_gp007__00007

Identity

Accession:
NC_070986 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Kuravirus› Escherichia_phage_vB_EcoP_EcoN5

TaxID: 2686238

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 248-302
PDB
D2 high residues 357-412
PDB
Domain cluster: representative
D3 high residues 681-785
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 41.0 3.68e-01 88.6% 97.4%
4ae7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 39.0 3.26e-01 82.9% 82.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974649 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.66 53.0 5.66e-01 95.2% 97.8%
3579362 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.53 38.0 3.78e-01 75.2% 70.0%
3593024 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.53 33.0 3.27e-01 87.6% 57.4%
3619980 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 37.0 3.71e-01 75.2% 70.9%
3741415 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.51 40.0 3.42e-01 83.8% 83.4%
3939443 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.50 36.0 3.57e-01 74.3% 71.8%
D4 high residues 793-922
PDB
Domain cluster: rep: MT701590.1__QPB09187.1__CPT_Miami_092__00092__D399-544
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25670.2 best Phage_tail_C_2 181.5 1.10e-53 100.0% 97.0%
D5 medium residues 69-153_230-247
PDB
D6 medium residues 561-641
PDB
Domain cluster: rep: MZ501112.1__QXV85762.1__bas23_0022__00022__D400-469
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.96e-01 80.2% 59.1%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 39.0 2.54e-01 70.4% 48.7%
1p50A02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.56 39.0 2.77e-01 72.8% 66.5%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.67e-01 75.3% 46.1%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.76e-01 77.8% 64.9%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 40.0 2.83e-01 81.5% 71.7%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.85e-01 96.3% 69.6%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.03e-01 82.7% 70.9%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 38.0 2.69e-01 77.8% 60.6%
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 42.0 2.77e-01 93.8% 36.1%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 34.0 3.18e-01 74.1% 53.3%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.76e-01 88.9% 42.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.50 38.0 2.94e-01 84.0% 87.9%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 2.95e-01 82.7% 80.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933565 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.62 46.0 2.96e-01 77.8% 60.5%
3781917 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.58 42.0 2.84e-01 76.5% 62.9%
3169468 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.69e-01 80.2% 49.1%
2082647 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 40.0 2.88e-01 75.3% 81.0%
4479376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.55 35.0 3.13e-01 76.5% 45.2%
3847020 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.54 44.0 2.94e-01 91.4% 56.9%
3682683 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.54 39.0 2.82e-01 77.8% 34.0%
3934570 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 41.0 2.72e-01 88.9% 38.9%
3496646 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 39.0 2.64e-01 84.0% 75.3%
5036626 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.80e-01 98.8% 46.8%
3927192 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.51 37.0 3.15e-01 79.0% 45.0%
3595735 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 38.0 2.55e-01 82.7% 48.9%
3255413 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.50 38.0 2.87e-01 79.0% 96.4%
3925881 5.1.4.407 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD 0.50 39.0 2.65e-01 90.1% 61.0%