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NC_070988.1__YP_010673876.1__PQC49_gp088__00088

Bact-Vir

NC_070988.1__YP_010673876.1__PQC49_gp088__00088

Identity

Accession:
NC_070988 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Kuravirus› Shigella_phage_SGF2

TaxID: 2601630

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-69
PDB
Domain cluster: rep: SRR1747022_scaffold_36_prodigal-single.1__X__X__00131__D11-62
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 70.0 6.29e-01 100.0% 81.5%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 58.0 4.35e-01 90.0% 75.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 6.02e-01 100.0% 97.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.69 58.0 5.33e-01 91.7% 71.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 55.0 5.31e-01 91.7% 87.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 55.0 5.04e-01 90.0% 93.7%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.70e-01 91.7% 96.6%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.64e-01 96.7% 100.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 4.35e-01 100.0% 47.0%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.20e-01 95.0% 93.2%
2qvwD02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.65 54.0 4.54e-01 96.7% 99.1%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 52.0 4.48e-01 95.0% 76.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.48e-01 100.0% 95.7%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 4.94e-01 100.0% 75.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 52.0 4.98e-01 96.7% 100.0%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 47.0 4.05e-01 78.3% 81.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.33e-01 98.3% 100.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 3.83e-01 100.0% 38.7%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 51.0 4.11e-01 91.7% 75.2%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.69e-01 88.3% 90.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 5.18e-01 100.0% 93.8%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 49.0 3.10e-01 86.7% 27.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.75e-01 85.0% 91.9%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.00e-01 86.7% 72.1%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.59 47.0 4.34e-01 95.0% 100.0%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 48.0 2.90e-01 90.0% 24.8%
4xiwC00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.58 48.0 3.23e-01 91.7% 50.6%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 47.0 3.84e-01 90.0% 82.7%
8ajqA01 3.90.1590.10 Alpha Beta › Alpha-Beta Complex › glutathione-dependent formaldehyde- activating enzyme (gfa) › glutathione-dependent formaldehyde- activating enzyme (gfa) 0.57 39.0 3.26e-01 73.3% 80.9%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 44.0 3.41e-01 90.0% 98.6%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.55 38.0 2.65e-01 71.7% 56.4%
1pm3A00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.54 42.0 4.11e-01 91.7% 89.9%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 48.0 4.03e-01 100.0% 90.1%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 4.06e-01 96.7% 96.5%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 46.0 4.42e-01 98.3% 97.2%
1gp0A00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.53 41.0 3.27e-01 86.7% 84.2%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.53 46.0 4.26e-01 100.0% 91.3%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 3.85e-01 100.0% 82.5%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 4.00e-01 100.0% 95.5%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 3.89e-01 100.0% 88.0%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 44.0 3.77e-01 95.0% 73.4%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.23e-01 78.3% 83.0%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 43.0 3.82e-01 95.0% 100.0%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 45.0 3.84e-01 98.3% 91.5%
1dc1A01 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.50 38.0 2.75e-01 90.0% 78.8%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 56.0 6.08e-01 96.7% 96.0%
4033907 4.1.1.280 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4176 0.74 59.0 5.12e-01 90.0% 66.3%
4429179 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 52.0 5.88e-01 88.3% 100.0%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.45e-01 91.7% 72.9%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.73e-01 93.3% 90.9%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 63.0 5.43e-01 100.0% 64.4%
4025294 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.71 59.0 5.16e-01 91.7% 82.2%
3954938 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 6.00e-01 98.3% 98.5%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 64.0 6.25e-01 100.0% 98.5%
4965721 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 4.87e-01 96.7% 77.4%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 63.0 6.16e-01 100.0% 98.5%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.43e-01 100.0% 91.8%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 59.0 5.40e-01 98.3% 95.0%
4938919 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.30e-01 86.7% 84.6%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 57.0 4.38e-01 95.0% 55.8%
3219441 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 54.0 4.98e-01 91.7% 93.8%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.14e-01 100.0% 66.3%
3514970 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 59.0 5.15e-01 100.0% 65.6%
4170983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.19e-01 91.7% 86.7%
3782292 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.67 54.0 4.90e-01 88.3% 90.0%
577 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.66 54.0 4.08e-01 95.0% 46.9%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 4.60e-01 96.7% 48.3%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 59.0 4.77e-01 100.0% 53.9%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.66 56.0 4.60e-01 96.7% 67.0%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.66 55.0 5.75e-01 95.0% 100.0%
3585214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 3.99e-01 78.3% 46.0%
3213571 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.65 54.0 3.32e-01 90.0% 24.3%
3240933 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 54.0 3.30e-01 90.0% 23.7%
3399422 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 58.0 4.99e-01 100.0% 63.2%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 58.0 5.17e-01 100.0% 72.9%
3169636 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 52.0 4.72e-01 93.3% 96.5%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 58.0 5.07e-01 100.0% 66.7%
4000622 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.64 56.0 4.45e-01 96.7% 51.7%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.64 49.0 4.44e-01 96.7% 58.9%
3935325 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 51.0 3.20e-01 86.7% 27.7%
3831450 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 55.0 4.84e-01 96.7% 87.8%
5035447 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.05e-01 88.3% 86.2%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.64 52.0 5.39e-01 98.3% 96.4%
5048696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 3.98e-01 96.7% 35.3%
5075469 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.64 52.0 5.07e-01 88.3% 86.2%
3256053 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.63 55.0 4.80e-01 96.7% 70.0%
3927335 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 53.0 3.38e-01 95.0% 29.8%
3245395 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 50.0 3.11e-01 88.3% 26.3%
5037939 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 55.0 4.10e-01 100.0% 40.6%
3616769 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.63 57.0 4.84e-01 100.0% 67.4%
3265965 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 54.0 3.21e-01 96.7% 22.0%
3237640 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 56.0 4.54e-01 100.0% 66.4%
5052093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.50e-01 88.3% 90.0%
3926183 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 51.0 3.22e-01 93.3% 29.7%
3900096 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.60 48.0 3.02e-01 85.0% 28.7%
3623819 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 48.0 3.04e-01 86.7% 26.9%
3198325 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 50.0 3.17e-01 93.3% 25.1%
3928760 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 49.0 3.03e-01 93.3% 24.2%
3941729 4.1.1.157 ↗ beta barrels › SH3 › SH3 › SH3 › YdfZ 0.58 50.0 5.09e-01 100.0% 98.3%
3231541 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 45.0 2.94e-01 88.3% 32.3%
3790784 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 44.0 2.93e-01 88.3% 19.2%
3706839 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.56 43.0 3.62e-01 96.7% 49.0%
3565027 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.56 42.0 2.62e-01 83.3% 25.4%
3234134 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 42.0 2.75e-01 88.3% 27.2%
3993006 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 48.0 3.00e-01 95.0% 31.5%
3933549 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 42.0 2.66e-01 88.3% 25.8%
3579597 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 48.0 3.98e-01 100.0% 80.0%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.54 48.0 3.86e-01 100.0% 76.7%
2448699 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 47.0 4.52e-01 98.3% 97.1%
3620431 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 48.0 3.93e-01 100.0% 80.0%
4084726 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 47.0 3.93e-01 100.0% 83.8%
4070992 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 47.0 3.85e-01 100.0% 80.0%
4573066 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 36.0 3.23e-01 73.3% 64.4%
4381865 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.52 45.0 3.78e-01 100.0% 81.8%
3578245 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.52 45.0 3.56e-01 96.7% 70.8%
3462034 1.1.7.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.51 45.0 3.66e-01 100.0% 94.8%
4804322 63.1.1.1 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR 0.51 38.0 2.98e-01 86.7% 74.2%
3407414 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.51 39.0 2.51e-01 88.3% 25.0%
3270538 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.50 43.0 3.42e-01 96.7% 70.4%
3825016 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.50 42.0 3.95e-01 93.3% 82.7%
4026033 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.50 44.0 3.62e-01 98.3% 94.5%