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NC_070990.1__YP_010674153.1__PQC56_gp095__00095

Bact-Vir

NC_070990.1__YP_010674153.1__PQC56_gp095__00095

Identity

Accession:
NC_070990 ↗
Kingdom:
phage

Quality

58.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mtkvariviridae› Kuravirus› Escherichia_phage_MN03

TaxID: 2711183

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-31_45-120
PDB
D2 medium residues 121-215
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e6vB02 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.59 44.0 3.19e-01 78.9% 72.7%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 3.88e-01 72.6% 76.4%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 35.0 3.86e-01 71.6% 84.1%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 38.0 3.66e-01 71.6% 85.7%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.55 46.0 4.66e-01 92.6% 92.8%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 39.0 3.15e-01 76.8% 89.3%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 33.0 3.53e-01 75.8% 74.1%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 38.0 3.29e-01 75.8% 81.8%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.51 37.0 3.64e-01 75.8% 75.0%
2kt2A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 32.0 3.53e-01 74.7% 85.5%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 43.0 3.99e-01 97.9% 92.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578641 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 38.0 4.30e-01 75.8% 77.1%
4106176 7577.1.1.7 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Cys_Met_Meta_PP 0.57 41.0 2.82e-01 74.7% 35.5%
3683887 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.56 32.0 3.15e-01 70.5% 49.5%
4296289 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.56 39.0 3.13e-01 74.7% 72.2%
4389376 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.55 40.0 3.91e-01 100.0% 68.2%
5073710 633.6.1.3 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › HpaB 0.54 38.0 2.98e-01 72.6% 73.7%
5063713 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.54 32.0 3.74e-01 74.7% 90.0%
3614444 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.53 38.0 2.84e-01 75.8% 42.0%
D3 medium residues 216-266_325-399
PDB