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NC_070997.1__YP_010674647.1__PQC63_gp05__00005

Bact-Vir

NC_070997.1__YP_010674647.1__PQC63_gp05__00005

Identity

Accession:
NC_070997 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ericdabvirus› Gordonia_phage_EricDab

TaxID: 3070616

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-132
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 36.2 9.80e-09 77.9% 62.0%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bh7A02 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.82 60.0 5.35e-01 75.2% 62.5%
6su5A01 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.77 65.0 5.86e-01 89.4% 66.9%
2y28B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.76 71.0 6.00e-01 100.0% 68.9%
1aroL00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.75 60.0 5.41e-01 85.0% 63.1%
1ohtA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.75 65.0 5.54e-01 92.0% 64.2%
2rkqA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.74 65.0 5.59e-01 92.9% 65.7%
3ep1A00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.73 63.0 5.49e-01 92.9% 70.1%
2xz4A00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.72 62.0 5.35e-01 90.3% 66.1%
2eaxA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.72 64.0 5.59e-01 95.6% 66.5%
5xz3B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.71 65.0 5.62e-01 97.3% 66.1%
4olsA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.70 60.0 5.05e-01 92.0% 57.3%
2xz8A00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.69 58.0 5.42e-01 88.5% 99.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953294 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.94 92.0 7.48e-01 100.0% 65.4%
1891396 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.81 60.0 5.07e-01 76.1% 54.9%
2445367 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.80 61.0 5.37e-01 82.3% 57.1%
2774594 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.79 66.0 5.91e-01 96.5% 65.1%
4088805 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.79 64.0 5.31e-01 86.7% 51.9%
2845647 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.78 64.0 5.72e-01 93.8% 63.4%
1900462 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 60.0 5.41e-01 85.0% 63.1%
3389811 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 66.0 5.57e-01 92.0% 63.4%
3967132 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 70.0 5.90e-01 100.0% 68.9%
3201810 285.1.1.0 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like 0.75 66.0 5.52e-01 93.8% 63.8%
1903375 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.74 65.0 5.59e-01 92.9% 65.7%
3910569 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.73 66.0 5.52e-01 96.5% 63.8%
3873499 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.73 64.0 5.92e-01 92.9% 79.3%
3957313 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.73 64.0 5.18e-01 93.8% 57.1%
1914461 285.1.1.0 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like 0.71 60.0 5.17e-01 91.2% 91.4%
3389776 285.1.1.0 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like 0.67 60.0 5.61e-01 97.3% 78.4%
6943 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.64 57.0 4.88e-01 99.1% 65.8%