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NC_070999.1__YP_010674971.1__PQC65_gp058__00058

Bact-Vir

NC_070999.1__YP_010674971.1__PQC65_gp058__00058

Identity

Accession:
NC_070999 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-118
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.68 44.0 3.83e-01 80.2% 43.3%
2g18I00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.64 53.0 4.19e-01 88.8% 78.6%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 53.0 4.92e-01 89.7% 90.5%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 44.0 4.47e-01 93.1% 71.9%
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.63 57.0 4.72e-01 100.0% 72.1%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.63 44.0 3.40e-01 72.4% 91.8%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.61 40.0 4.12e-01 89.7% 68.8%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 48.0 4.02e-01 82.8% 91.2%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 49.0 3.33e-01 87.1% 39.7%
2x9oA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.60 53.0 4.27e-01 98.3% 73.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 4.55e-01 85.3% 75.5%
1lurA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 44.0 3.18e-01 76.7% 93.5%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.94e-01 70.7% 95.3%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 47.0 3.38e-01 87.9% 62.7%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.58 52.0 4.04e-01 100.0% 71.8%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.58 35.0 3.68e-01 79.3% 65.7%
1gwyA00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.58 52.0 4.56e-01 100.0% 95.4%
4jf6A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 47.0 3.73e-01 88.8% 68.6%
6p2lA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.49e-01 98.3% 94.7%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 47.0 3.25e-01 90.5% 61.9%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.56 46.0 3.65e-01 89.7% 98.8%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 44.0 3.38e-01 87.9% 60.3%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.55 48.0 3.44e-01 98.3% 59.5%
3w7tA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 43.0 3.45e-01 84.5% 86.6%
1m6kA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 45.0 3.53e-01 89.7% 69.6%
3gekA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 38.0 3.64e-01 70.7% 93.9%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.46e-01 98.3% 80.5%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.54 41.0 3.37e-01 81.0% 98.6%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 43.0 4.42e-01 87.9% 93.8%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.53 46.0 3.79e-01 93.1% 64.3%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 44.0 4.41e-01 90.5% 94.1%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 42.0 3.95e-01 86.2% 91.2%
4ae8D00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 44.0 3.99e-01 92.2% 78.8%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 43.0 3.85e-01 87.9% 64.5%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 42.0 3.70e-01 86.2% 88.4%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 3.31e-01 98.3% 91.4%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 37.0 3.42e-01 75.9% 96.8%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 38.0 3.24e-01 78.4% 78.3%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 43.0 3.72e-01 99.1% 90.7%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 42.0 3.20e-01 88.8% 74.3%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.50 41.0 3.42e-01 90.5% 56.7%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 35.0 3.45e-01 71.6% 97.6%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3459135 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.68 40.0 4.13e-01 83.6% 60.9%
3650598 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.68 48.0 3.72e-01 72.4% 95.4%
4375642 5084.5.1.10 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 0.67 51.0 3.44e-01 79.3% 93.0%
3581297 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.63 47.0 3.75e-01 75.9% 41.9%
3802306 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.63 41.0 4.49e-01 76.7% 80.0%
4334879 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.63 57.0 4.49e-01 98.3% 74.0%
3438881 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.63 53.0 3.94e-01 89.7% 66.9%
4021785 1100.1.1.0 beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein 0.63 48.0 3.79e-01 80.2% 76.2%
3819740 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.63 39.0 4.37e-01 70.7% 78.9%
3928712 1100.1.1.1 beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 0.63 45.0 3.54e-01 74.1% 37.9%
4362579 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.63 47.0 4.06e-01 80.2% 50.9%
3251788 9.1.1.37 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.62 42.0 3.73e-01 80.2% 48.5%
3935761 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.62 46.0 3.48e-01 78.4% 86.2%
3512069 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.61 46.0 3.83e-01 78.4% 58.5%
4322035 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.61 54.0 4.25e-01 96.6% 75.4%
3255634 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 49.0 3.36e-01 86.2% 67.5%
3627952 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.60 52.0 4.31e-01 95.7% 75.2%
3015419 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.60 53.0 4.21e-01 99.1% 68.3%
4659430 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.60 45.0 3.35e-01 78.4% 89.8%
3822745 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 44.0 4.33e-01 76.7% 78.4%
4078410 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.60 53.0 4.20e-01 99.1% 69.2%
312112 867.1.1.2 a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.59 52.0 4.14e-01 99.1% 67.7%
3318685 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.59 43.0 4.49e-01 76.7% 82.9%
3253394 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.59 54.0 4.80e-01 100.0% 79.1%
3592006 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 49.0 4.62e-01 92.2% 87.6%
2485676 292.3.1.1 a+b two layers › RIP/Polo-box domain › TipC soluble domain › TipC soluble domain › TipC 0.58 49.0 4.18e-01 89.7% 95.6%
3576335 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 3.47e-01 90.5% 56.8%
3633013 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.58 40.0 3.69e-01 70.7% 75.2%
3711273 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.58 38.0 3.89e-01 91.4% 68.4%
4046546 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.57 43.0 3.19e-01 77.6% 90.5%
3917054 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.57 48.0 4.75e-01 95.7% 86.4%
3952882 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.57 51.0 4.43e-01 97.4% 85.1%
3514135 5084.1.1.19 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › BCSC_C 0.57 46.0 4.08e-01 94.8% 60.6%
3287036 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.57 50.0 4.39e-01 96.6% 84.7%
3629700 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 48.0 3.45e-01 92.2% 60.0%
3281686 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.56 50.0 4.42e-01 96.6% 85.5%
3401850 883.1.1.3 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.56 39.0 3.25e-01 72.4% 68.1%
3936017 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 47.0 4.90e-01 100.0% 97.3%
3962436 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 40.0 3.92e-01 75.0% 98.4%
3283330 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.55 44.0 3.47e-01 87.1% 49.4%
3743536 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.55 47.0 3.64e-01 94.8% 64.2%
3392175 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 47.0 3.56e-01 94.8% 70.0%
4254174 4099.1.1.22 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.54 43.0 4.03e-01 86.2% 75.2%
4936938 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 42.0 3.92e-01 82.8% 82.8%
4466226 5087.1.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.53 44.0 4.64e-01 87.9% 97.1%
4445572 4099.1.1.22 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.53 43.0 4.14e-01 86.2% 89.2%
5010189 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 43.0 4.03e-01 85.3% 83.5%
1115776 295.1.1.5 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly 0.53 44.0 3.75e-01 87.9% 58.8%
4951451 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 40.0 3.70e-01 77.6% 81.4%
3836869 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.52 39.0 3.86e-01 76.7% 88.3%
4397319 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 39.0 3.68e-01 79.3% 94.3%
3814459 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 43.0 4.11e-01 90.5% 94.1%
4403418 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.52 40.0 3.03e-01 83.6% 66.7%
3824277 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 42.0 4.11e-01 88.8% 89.9%
3196261 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.51 44.0 4.12e-01 97.4% 77.1%
5057645 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.51 41.0 4.18e-01 87.1% 97.4%
3606232 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 35.0 3.74e-01 90.5% 82.5%