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NC_071001.1__YP_010675288.1__PQD10_gp49__00049

Bact-Vir

NC_071001.1__YP_010675288.1__PQD10_gp49__00049

Identity

Accession:
NC_071001 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-72
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.75 61.0 5.16e-01 87.7% 70.9%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.73 54.0 5.25e-01 78.5% 76.1%
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.73 64.0 6.38e-01 98.5% 97.0%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.70 55.0 4.99e-01 86.2% 72.4%
3lulA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.69 60.0 5.08e-01 100.0% 75.0%
2oxaA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.69 54.0 3.32e-01 86.2% 87.4%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.67 59.0 4.72e-01 100.0% 80.5%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 51.0 4.68e-01 84.6% 93.2%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.19e-01 80.0% 77.4%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.65 55.0 3.63e-01 93.8% 34.7%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.65 54.0 3.51e-01 93.8% 33.7%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.50e-01 75.4% 70.8%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 53.0 5.51e-01 87.7% 95.0%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.64 52.0 4.93e-01 92.3% 89.9%
3pqaB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.64 54.0 3.56e-01 93.8% 32.4%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.63 49.0 3.59e-01 86.2% 81.6%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 52.0 3.78e-01 93.8% 90.2%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 47.0 3.26e-01 83.1% 39.6%
2kcwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 45.0 3.65e-01 87.7% 89.8%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 3.84e-01 100.0% 44.6%
8adnN01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 46.0 3.31e-01 84.6% 41.9%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.59 47.0 4.65e-01 90.8% 87.5%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 42.0 3.39e-01 76.9% 87.7%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.82e-01 89.2% 89.8%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.57 33.0 3.22e-01 100.0% 48.6%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.60e-01 93.8% 96.2%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 47.0 3.64e-01 93.8% 71.1%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 40.0 2.97e-01 75.4% 65.1%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.56 40.0 3.66e-01 76.9% 85.7%
2hqyA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 43.0 3.24e-01 84.6% 66.7%
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.56 42.0 2.75e-01 83.1% 26.7%
1k2xB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.56 41.0 3.32e-01 81.5% 65.9%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.61e-01 84.6% 77.4%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.55 34.0 3.35e-01 72.3% 56.3%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.56e-01 93.8% 45.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 37.0 3.64e-01 70.8% 93.0%
2fe7B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.18e-01 86.2% 86.1%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 32.0 3.82e-01 98.5% 100.0%
4my0A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 3.15e-01 81.5% 69.3%
3gfaA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 42.0 3.09e-01 92.3% 64.3%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.40e-01 92.3% 46.9%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 40.0 2.70e-01 92.3% 60.9%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.37e-01 92.3% 93.1%
6hwjA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.50 43.0 2.98e-01 100.0% 52.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032233 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 61.0 4.90e-01 75.4% 46.1%
4029491 3781.1.1.0 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain 0.80 59.0 6.60e-01 83.1% 100.0%
4639278 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.77 54.0 5.13e-01 72.3% 73.3%
3967043 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.75 57.0 5.02e-01 81.5% 77.9%
3781705 101.1.2.527 alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.74 63.0 5.20e-01 93.8% 86.1%
5031192 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.73 55.0 4.95e-01 81.5% 67.8%
4997861 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.71 56.0 4.95e-01 86.2% 66.3%
4017306 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.70 53.0 4.96e-01 81.5% 88.7%
3190824 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.67 52.0 4.98e-01 83.1% 96.0%
5033884 206.1.3.40 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.66 58.0 4.02e-01 100.0% 37.8%
5082955 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.66 47.0 3.69e-01 76.9% 66.2%
4110273 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 52.0 3.20e-01 90.8% 14.1%
4992192 192.20.1.0 alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD 0.64 56.0 4.96e-01 100.0% 91.6%
4013126 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.64 38.0 3.41e-01 100.0% 42.2%
5047100 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.62 46.0 3.71e-01 80.0% 92.3%
4976490 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 44.0 3.45e-01 78.5% 96.0%
3830939 206.1.3.18 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.60 52.0 3.46e-01 100.0% 25.0%
428210 3243.1.1.1 alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.60 49.0 3.44e-01 92.3% 85.4%
5045156 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 45.0 3.63e-01 86.2% 81.4%
4408163 206.1.3.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.60 52.0 3.77e-01 100.0% 39.5%
3538243 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.59 42.0 4.00e-01 76.9% 71.2%
3773033 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 40.0 2.56e-01 72.3% 26.4%
4928364 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 48.0 3.80e-01 95.4% 80.4%
3740646 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.57 42.0 4.00e-01 80.0% 80.0%
5053485 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.57 44.0 3.23e-01 83.1% 61.5%
390034 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 47.0 3.67e-01 93.8% 73.5%
3222449 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 44.0 2.89e-01 83.1% 50.2%
5075529 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 47.0 3.71e-01 89.2% 93.0%
3234570 3009.1.1.1 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA 0.56 49.0 3.44e-01 98.5% 87.4%
11109 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.56 43.0 3.26e-01 84.6% 68.3%
5032939 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.56 42.0 3.16e-01 84.6% 62.2%
3392896 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 44.0 4.06e-01 86.2% 74.1%
4833284 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.55 41.0 2.94e-01 84.6% 58.3%
3981752 829.1.1.1 a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.55 41.0 3.27e-01 80.0% 94.6%
3592289 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.55 47.0 3.61e-01 100.0% 47.5%
4590767 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 39.0 2.41e-01 78.5% 12.2%
3236584 323.1.1.6 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.54 42.0 2.50e-01 90.8% 81.8%
5031468 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 41.0 3.18e-01 86.2% 88.1%
4996495 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 42.0 3.27e-01 90.8% 94.5%
3246474 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.53 44.0 2.90e-01 93.8% 85.7%
3698127 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 43.0 2.99e-01 96.9% 63.1%
5060140 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 39.0 3.99e-01 81.5% 81.5%
4512321 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.51 46.0 3.39e-01 100.0% 85.9%
3173685 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.51 44.0 3.38e-01 98.5% 90.6%
3949345 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 38.0 3.04e-01 87.7% 90.9%
3547257 604.1.1.115 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PANTS-like 0.51 40.0 3.91e-01 86.2% 97.1%
2448320 325.1.2.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Molybdopterin synthase subunit MoaE 0.50 43.0 3.44e-01 100.0% 85.8%