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NC_071008.1__YP_010676049.1__PQD17_gp45__00045

Bact-Vir

NC_071008.1__YP_010676049.1__PQD17_gp45__00045

Identity

Accession:
NC_071008 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-45
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.71 60.0 4.90e-01 100.0% 51.9%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 46.0 4.12e-01 93.0% 46.8%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.67 57.0 3.92e-01 100.0% 44.1%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.15e-01 100.0% 79.7%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.13e-01 100.0% 71.9%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 56.0 3.38e-01 97.7% 16.8%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.64 54.0 4.20e-01 97.7% 44.9%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.63 51.0 3.90e-01 97.7% 85.5%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.60 48.0 3.88e-01 100.0% 47.5%
5mw8A01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.59 48.0 3.71e-01 100.0% 91.2%
1rxlA00 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.58 44.0 3.19e-01 90.7% 80.4%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 3.59e-01 90.7% 46.7%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.31e-01 100.0% 85.3%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 44.0 2.72e-01 100.0% 15.7%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 43.0 3.59e-01 90.7% 47.0%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 39.0 2.97e-01 83.7% 85.0%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.25e-01 95.3% 93.0%
4ii2A06 3.10.290.60 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain 0.54 44.0 3.57e-01 100.0% 86.2%
3k6fA00 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 42.0 3.39e-01 93.0% 75.0%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 3.40e-01 100.0% 39.5%
2kt9A01 3.30.390.140 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.54 39.0 3.18e-01 86.0% 40.4%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 42.0 3.93e-01 97.7% 75.0%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.64e-01 100.0% 16.0%
1y4wA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.59e-01 100.0% 17.7%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.61e-01 100.0% 27.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.16e-01 93.0% 69.0%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 2.82e-01 93.0% 27.5%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.16e-01 88.4% 38.5%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.33e-01 100.0% 47.5%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.52 41.0 3.80e-01 95.3% 69.8%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 41.0 3.73e-01 97.7% 77.3%
3m7nA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.24e-01 88.4% 44.2%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 2.96e-01 83.7% 31.1%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.52 41.0 3.44e-01 100.0% 60.9%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 38.0 2.44e-01 100.0% 13.3%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 36.0 2.47e-01 76.7% 56.2%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.63e-01 97.7% 78.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 37.0 3.00e-01 86.0% 67.3%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 38.0 3.05e-01 93.0% 87.7%
1kvzA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.51 39.0 3.17e-01 100.0% 72.9%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 40.0 2.92e-01 100.0% 44.9%
3oc9A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 37.0 2.28e-01 86.0% 46.8%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 38.0 3.10e-01 97.7% 75.0%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.19e-01 88.4% 85.2%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4493776 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 70.0 5.99e-01 100.0% 87.1%
3999482 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.77 68.0 4.99e-01 100.0% 64.5%
3890362 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.33e-01 100.0% 80.0%
3936225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 59.0 5.05e-01 100.0% 70.0%
3411613 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 55.0 3.20e-01 100.0% 18.7%
3616618 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 54.0 3.19e-01 100.0% 18.9%
3234851 11.1.5.6 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box 0.64 51.0 3.40e-01 90.7% 74.1%
3514202 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.63 50.0 3.27e-01 95.3% 21.9%
3266828 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.63 51.0 3.72e-01 90.7% 37.4%
3547051 7516.1.1.37 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CHGN 0.61 51.0 3.95e-01 100.0% 55.2%
3970847 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 3.88e-01 88.4% 52.9%
3577495 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 3.08e-01 100.0% 40.0%
3677170 868.1.1.11 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7903 0.57 42.0 2.67e-01 88.4% 13.7%
3927453 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.57 42.0 3.08e-01 86.0% 42.2%
3933422 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.56 42.0 3.09e-01 86.0% 40.8%
3210912 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.42e-01 83.7% 92.9%
4940942 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.71e-01 100.0% 49.5%
5004589 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 44.0 3.49e-01 100.0% 75.5%
3216612 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 45.0 3.09e-01 100.0% 80.5%
3742051 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.72e-01 100.0% 37.4%
4185827 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 40.0 3.17e-01 83.7% 52.7%
3935094 2484.5.1.3 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.54 39.0 3.06e-01 86.0% 44.3%
3943067 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.54 43.0 3.20e-01 100.0% 39.3%
3942673 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 39.0 2.71e-01 86.0% 22.6%
3979903 4.1.1.465 beta barrels › SH3 › SH3 › SH3 › SH3_6, SH3_7 0.53 42.0 2.69e-01 100.0% 21.1%
3450584 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 43.0 2.67e-01 100.0% 14.3%
3888095 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 38.0 2.85e-01 86.0% 40.7%
3192603 2484.1.1.5 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.53 40.0 2.61e-01 83.7% 21.7%
4009799 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.53 41.0 3.25e-01 93.0% 46.7%
3516143 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.34e-01 97.7% 68.2%
3058745 2484.1.1.97 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC 0.52 37.0 3.78e-01 83.7% 77.3%
3514912 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 36.0 3.15e-01 81.4% 44.0%
3328840 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.52 37.0 3.20e-01 83.7% 82.4%
3616839 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.07e-01 86.0% 68.0%
3877730 2484.1.1.5 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.52 39.0 2.57e-01 86.0% 23.5%
418817 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 39.0 2.71e-01 86.0% 21.4%
4641382 4099.1.1.32 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 0.52 40.0 2.87e-01 95.3% 24.8%
2559738 79.1.1.9 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.52 36.0 2.17e-01 76.7% 9.2%
1307002 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.52 37.0 2.88e-01 83.7% 40.5%
5080431 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.11e-01 100.0% 34.3%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 40.0 3.56e-01 100.0% 73.3%
3980078 274.1.1.24 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSppdC 0.51 39.0 3.52e-01 95.3% 62.9%
3342794 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 37.0 3.10e-01 86.0% 82.2%
3650904 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.27e-01 97.7% 100.0%
4796553 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 36.0 3.45e-01 86.0% 64.8%
3937784 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.50 41.0 3.02e-01 100.0% 37.7%
3367231 3116.1.1.1 a+b two layers › Probable 30S ribosomal protein PSRP-3 › Probable 30S ribosomal protein PSRP-3 › Probable 30S ribosomal protein PSRP-3 › PSRP-3_Ycf65 0.50 37.0 3.24e-01 86.0% 86.3%
3371185 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.50 38.0 2.39e-01 83.7% 13.7%
3279044 2.1.1.314 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.50 37.0 3.40e-01 88.4% 58.5%
D2 medium residues 58-110
PDB
Domain cluster: representative
D3 medium residues 111-250
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.56 28.0 3.87e-01 82.9% 95.8%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 29.0 3.17e-01 72.1% 59.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3270273 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 2.77e-01 86.4% 46.7%