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NC_071011.1__YP_010676267.1__PQD67_gp010__00010

Bact-Vir

NC_071011.1__YP_010676267.1__PQD67_gp010__00010

Identity

Accession:
NC_071011 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 6.03e-01 94.6% 78.8%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 60.0 5.45e-01 92.9% 64.1%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 56.0 5.63e-01 87.5% 100.0%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.77e-01 94.6% 100.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 4.92e-01 100.0% 74.8%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 4.84e-01 91.1% 81.7%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 44.0 3.96e-01 82.1% 48.7%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 44.0 4.01e-01 80.4% 50.0%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.67 50.0 4.96e-01 85.7% 76.7%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.67e-01 91.1% 78.8%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.67 56.0 4.91e-01 100.0% 68.5%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.50e-01 96.4% 100.0%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.26e-01 96.4% 48.8%
2yviA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 48.0 4.14e-01 78.6% 59.6%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.65 53.0 4.08e-01 92.9% 65.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.62e-01 96.4% 60.0%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 53.0 3.85e-01 98.2% 32.0%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.99e-01 96.4% 86.7%
1ignB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 53.0 4.63e-01 100.0% 85.9%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 45.0 4.00e-01 78.6% 60.9%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.63 55.0 3.71e-01 98.2% 72.3%
3mw6B00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.63 53.0 4.60e-01 100.0% 96.8%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 51.0 4.96e-01 100.0% 82.4%
2kvcA01 1.10.150.430 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle 0.63 50.0 4.47e-01 96.4% 61.4%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 45.0 3.34e-01 76.8% 76.5%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 50.0 4.64e-01 98.2% 71.1%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.62 44.0 3.79e-01 75.0% 50.6%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 42.0 3.78e-01 73.2% 63.4%
3tuiD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 2.90e-01 76.8% 20.3%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 42.0 4.00e-01 73.2% 65.6%
1bc0A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.60 50.0 4.39e-01 98.2% 62.8%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.59 40.0 3.77e-01 71.4% 61.1%
4nmyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 46.0 3.35e-01 94.6% 74.1%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.59 45.0 4.26e-01 85.7% 72.5%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.59 45.0 3.33e-01 85.7% 65.0%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.59 43.0 3.88e-01 83.9% 68.9%
5mlc900 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.57 45.0 3.76e-01 91.1% 87.9%
6ofsA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 44.0 3.05e-01 91.1% 59.8%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.21e-01 87.5% 50.9%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 45.0 4.22e-01 85.7% 74.6%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 42.0 4.34e-01 89.3% 92.3%
1bi0A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.55 41.0 3.91e-01 80.4% 87.9%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 41.0 4.16e-01 100.0% 100.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3781503 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 63.0 6.40e-01 85.7% 90.9%
4501343 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 69.0 7.00e-01 96.4% 98.2%
4998572 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 68.0 5.94e-01 100.0% 64.7%
3800383 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 67.0 6.47e-01 100.0% 86.2%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.77 61.0 5.56e-01 89.3% 65.3%
3950977 5058.1.1.9 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V 0.77 53.0 3.84e-01 73.2% 93.5%
3641099 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 62.0 6.13e-01 92.9% 93.3%
3484480 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.76 67.0 5.92e-01 96.4% 87.2%
1068633 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.76 57.0 6.04e-01 91.1% 100.0%
3406014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.99e-01 100.0% 83.1%
3239718 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 63.0 5.99e-01 100.0% 80.0%
3283752 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.74 64.0 5.46e-01 100.0% 64.2%
4390290 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.74 63.0 6.04e-01 98.2% 86.2%
3672635 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.74 62.0 5.77e-01 100.0% 76.0%
4028411 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.69e-01 92.9% 95.4%
3840404 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.72 63.0 6.20e-01 100.0% 100.0%
3240699 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.71 59.0 5.54e-01 94.6% 75.7%
3584520 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 63.0 5.02e-01 98.2% 51.8%
167309 592.2.1.3 alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 0.70 60.0 4.97e-01 100.0% 53.3%
4956886 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.69 57.0 4.33e-01 94.6% 45.7%
3856707 101.1.1.89 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_7 0.69 59.0 5.45e-01 100.0% 74.7%
3993576 610.3.1.3 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 0.69 58.0 4.28e-01 100.0% 38.2%
3928773 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.28e-01 100.0% 73.3%
4928573 183.1.1.5 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repress 0.69 53.0 4.25e-01 85.7% 52.2%
4994779 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.68 56.0 4.92e-01 92.9% 89.4%
3707222 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.61e-01 96.4% 96.4%
3657981 198.1.1.16 alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 0.68 58.0 5.22e-01 100.0% 86.3%
3252439 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.67 58.0 5.20e-01 100.0% 81.2%
3692197 101.1.3.9 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-bind_8 0.67 54.0 5.64e-01 87.5% 98.0%
3410327 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 4.98e-01 100.0% 90.0%
5034762 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.66 54.0 4.26e-01 100.0% 45.2%
3500138 564.1.1.0 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.66 53.0 5.24e-01 91.1% 93.3%
4992111 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.65 55.0 4.25e-01 98.2% 46.7%
3196401 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.41e-01 98.2% 96.4%
3972090 101.1.2.668 alpha arrays › HTH › HTH › winged helix domain › PF28010 0.65 52.0 4.61e-01 91.1% 76.5%
3925617 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.62 43.0 3.75e-01 73.2% 50.6%
3567670 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.62 43.0 3.64e-01 73.2% 78.9%
3529707 4.1.1.453 beta barrels › SH3 › SH3 › SH3 › HR1_TOCA 0.62 43.0 3.56e-01 73.2% 45.3%
3897957 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.62 51.0 4.63e-01 96.4% 80.0%
3626769 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.62 43.0 3.63e-01 73.2% 47.8%
3281557 7094.1.1.0 alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin 0.61 43.0 4.16e-01 82.1% 64.6%
3519972 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.61 43.0 3.60e-01 73.2% 47.8%
3646875 109.4.1.1136 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N 0.61 48.0 3.89e-01 89.3% 44.3%
5028132 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.60 48.0 4.43e-01 94.6% 66.3%
3213526 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.60 42.0 3.37e-01 73.2% 41.0%
4048127 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 43.0 3.75e-01 80.4% 82.4%
3576131 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 42.0 3.71e-01 78.6% 62.0%
3781940 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 44.0 3.65e-01 87.5% 65.0%
3686518 101.1.2.384 alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.55 43.0 4.39e-01 91.1% 94.5%
3509826 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 43.0 3.40e-01 91.1% 79.2%
3458695 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 42.0 3.88e-01 83.9% 67.1%
3431874 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 39.0 3.41e-01 78.6% 58.8%
3331556 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 38.0 3.19e-01 76.8% 51.6%
3506838 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.52 41.0 3.45e-01 85.7% 82.1%
3257352 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.52 41.0 3.76e-01 94.6% 82.5%
3399908 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.51 36.0 3.33e-01 76.8% 68.0%
3595069 604.1.1.199 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26165 0.50 45.0 4.17e-01 100.0% 98.6%
3514683 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 42.0 3.42e-01 96.4% 82.7%