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NC_071013.1__YP_010676490.1__PQD69_gp024__00024

Bact-Vir

NC_071013.1__YP_010676490.1__PQD69_gp024__00024

Identity

Accession:
NC_071013 ↗
Kingdom:
phage

Quality

74.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Carnodivirus› Carnobacterium_phage_cd4

TaxID: 2849246

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-103
PDB
Domain cluster: rep: OP947159.1__WBC28288.1__DPMD02_24__00025__D7-135
D2 high residues 191-208_297-365
PDB
D3 high residues 213-293
PDB
Domain cluster: rep: PP028463.1__WQZ01560.1__DDLHHHOO_00072__00071__D9-84
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1augA00 3.40.630.20 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Peptidase C15, pyroglutamyl peptidase I-like 0.58 41.0 3.04e-01 74.1% 87.6%
1qhxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.50e-01 100.0% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034618 3071.1.1.0 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.80 63.0 6.72e-01 100.0% 95.7%
3823244 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 40.0 3.44e-01 75.3% 66.7%
3605091 1189.1.1.1 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › Trypan_glycop 0.51 45.0 2.96e-01 100.0% 25.8%
D4 high residues 938-1052
PDB
Domain cluster: rep: OR521085.1__WNO28334.1__SEA_PSONYX_24__00024__D30-132
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.76 64.0 6.72e-01 99.1% 99.0%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.75 64.0 6.62e-01 99.1% 98.1%
4nzjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 43.0 4.78e-01 94.8% 97.7%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.60 45.0 4.45e-01 96.5% 75.4%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.59 33.0 3.87e-01 100.0% 78.5%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 47.0 4.93e-01 99.1% 93.3%
4jx0A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 48.0 4.47e-01 87.8% 81.8%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 46.0 4.24e-01 87.8% 83.6%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 45.0 4.09e-01 87.8% 82.8%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.55 47.0 3.80e-01 100.0% 86.7%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 44.0 3.98e-01 86.1% 79.4%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 4.36e-01 99.1% 90.6%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 37.0 3.24e-01 72.2% 90.0%
3h2gA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.55e-01 99.1% 94.3%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.52 39.0 3.93e-01 79.1% 80.5%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 4.23e-01 91.3% 97.9%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.51 30.0 3.61e-01 87.8% 94.3%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 44.0 3.43e-01 100.0% 83.9%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 41.0 4.18e-01 100.0% 93.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
961561 5092.1.1.4 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.76 63.0 6.63e-01 99.1% 98.1%
1156585 5092.1.1.4 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.75 64.0 6.50e-01 99.1% 92.9%
5049002 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 39.0 4.20e-01 95.7% 77.9%
4971555 9.13.1.3 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3224 0.58 48.0 4.44e-01 88.7% 88.9%
4579430 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.58 46.0 4.19e-01 87.0% 81.6%
3688654 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.57 45.0 3.93e-01 87.0% 83.2%
3635091 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.57 45.0 4.03e-01 87.0% 84.0%
4017051 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.56 45.0 4.21e-01 85.2% 80.7%
4044601 9.13.1.4 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › DUF3237 0.56 45.0 4.39e-01 87.0% 85.2%
169161 10.12.1.35 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ppnp 0.54 42.0 4.36e-01 99.1% 90.6%
4958029 12.3.1.75 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N_bis 0.54 48.0 3.91e-01 100.0% 85.9%
3973546 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 37.0 3.32e-01 99.1% 50.9%
3231372 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 42.0 4.09e-01 87.8% 82.3%
3394080 12.1.1.40 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyc_hyd_38C_2 0.52 39.0 4.22e-01 88.7% 97.8%
4958830 12.3.1.75 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N_bis 0.51 44.0 3.64e-01 99.1% 87.1%
3971381 206.1.1.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo 0.51 38.0 3.08e-01 97.4% 39.7%
4960006 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 42.0 4.28e-01 100.0% 94.5%
3191836 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 38.0 2.57e-01 79.1% 29.5%
3593049 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 39.0 3.28e-01 84.3% 62.9%
D5 medium residues 553-592_636-646
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.67 56.0 4.15e-01 100.0% 64.4%
2e26A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 48.0 3.44e-01 100.0% 42.4%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.40e-01 76.5% 57.1%
5t89X01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.80e-01 92.2% 59.0%
3v4vB01 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.54 44.0 3.41e-01 96.1% 56.2%
1a66A00 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.50 35.0 2.60e-01 80.4% 62.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3872149 11.1.1.74 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SVA 0.60 42.0 3.28e-01 76.5% 45.0%
3967397 7503.1.1.8 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.54 39.0 2.76e-01 80.4% 26.0%
3474475 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.89e-01 96.1% 77.5%
4199197 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.52 36.0 2.48e-01 100.0% 18.2%
1841049 1086.1.1.1 ↗ beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › ASTN_2_hairpin 0.50 37.0 3.61e-01 78.4% 83.6%