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NC_071014.1__YP_010676608.1__PQD70_gp033__00033
Bact-VirNC_071014.1__YP_010676608.1__PQD70_gp033__00033
Identity
- Accession:
- NC_071014 ↗
- Kingdom:
- phage
Quality
67.1
mean pLDDT
Taxonomy
TaxID: 2338395
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 525-618
Domain cluster:
rep: KP202970.1__AJD82855.1__JWAP_00022__00022__D143-223
D2
high
residues 776-887
Domain cluster:
rep: NC_031125.1__YP_009292659.1__BIZ66_gp19__00019__D922-1038
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4npjB02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.66 | 49.0 | 4.56e-01 | 79.5% | 61.3% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 33.0 | 4.05e-01 | 80.4% | 84.5% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.60 | 37.0 | 2.95e-01 | 75.9% | 30.4% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 35.0 | 2.77e-01 | 74.1% | 28.6% |
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 45.0 | 4.53e-01 | 90.2% | 79.1% |
| 5irbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 4.30e-01 | 73.2% | 94.2% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 44.0 | 4.16e-01 | 81.2% | 97.1% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.58 | 46.0 | 3.41e-01 | 85.7% | 95.2% |
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 36.0 | 3.68e-01 | 92.9% | 64.8% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.57 | 32.0 | 3.99e-01 | 89.3% | 95.3% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 35.0 | 3.33e-01 | 100.0% | 52.7% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 35.0 | 3.78e-01 | 97.3% | 75.3% |
| 4lduA02 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.54 | 39.0 | 4.01e-01 | 93.8% | 80.2% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 27.0 | 3.40e-01 | 77.7% | 89.5% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.53 | 39.0 | 3.63e-01 | 84.8% | 61.6% |
| 4bsjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.64e-01 | 74.1% | 92.7% |
| 3ig4A02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.51 | 38.0 | 3.09e-01 | 83.0% | 46.8% |
| 3f8uB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 45.0 | 4.35e-01 | 100.0% | 88.1% |
| 5lf5A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.98e-01 | 74.1% | 97.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588265 | 3386.1.1.0 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related | 0.93 | 70.0 | 7.84e-01 | 100.0% | 96.6% |
| 2452961 | 3386.1.1.3 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › ORF68_C | 0.73 | 68.0 | 6.61e-01 | 100.0% | 94.3% |
| 3947507 | 11.1.1.619 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TcfC | 0.63 | 29.0 | 3.43e-01 | 79.5% | 60.0% |
| None | — | 0.58 | 46.0 | 3.40e-01 | 83.9% | 95.2% | |
| 3237567 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.58 | 27.0 | 3.61e-01 | 76.8% | 87.3% |
| 3471721 | 11.1.1.887 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMM62 | 0.56 | 39.0 | 3.99e-01 | 72.3% | 95.5% |
| 3995413 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 40.0 | 3.21e-01 | 83.9% | 38.2% |
| 5046771 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.53 | 41.0 | 3.24e-01 | 84.8% | 45.4% |
| 3531090 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.52 | 39.0 | 3.39e-01 | 84.8% | 49.7% |
| 3991044 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.52 | 41.0 | 4.11e-01 | 86.6% | 84.3% |
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.52 | 45.0 | 4.42e-01 | 100.0% | 97.6% |
| 5065346 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.51 | 40.0 | 3.26e-01 | 84.8% | 49.8% |
| 3170622 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.50 | 44.0 | 2.65e-01 | 99.1% | 97.9% |