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NC_071018.1__YP_010677175.1__PQD74_gp092__00069

Bact-Vir

NC_071018.1__YP_010677175.1__PQD74_gp092__00069

Identity

Accession:
NC_071018 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Siaravirus› Stenotrophomonas_phage_Siara

TaxID: 2859658

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-73
PDB
Domain cluster: rep: MW677525.1__QXN72396.1__RCSIMONEHASTD_67__00067__D2-76
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 41.0 3.77e-01 70.0% 51.1%
1ywmA01 2.60.500.10 Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain 0.59 39.0 3.52e-01 92.9% 48.0%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.59 40.0 3.38e-01 71.4% 50.0%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 40.0 3.92e-01 74.3% 90.8%
3rqtA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 37.0 2.58e-01 81.4% 19.4%
3ikwA02 3.10.540.20 Alpha Beta › Roll › duf1285 like fold › 0.55 36.0 3.62e-01 97.1% 65.7%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.55 34.0 3.55e-01 92.9% 68.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.96e-01 71.4% 88.7%
1xocA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 36.0 2.83e-01 70.0% 46.5%
2grvA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 37.0 2.77e-01 71.4% 47.1%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.49e-01 78.6% 92.3%
4iqzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 36.0 3.23e-01 74.3% 64.0%
1w2wB00 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.51 42.0 3.14e-01 94.3% 73.3%
4nxyA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 3.03e-01 88.6% 63.1%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 39.0 3.69e-01 88.6% 94.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4182040 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.68 49.0 2.96e-01 75.7% 69.8%
4611577 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.65 46.0 4.44e-01 74.3% 77.5%
3639077 247.1.1.23 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2+Lactamase_B_4 0.61 49.0 2.79e-01 88.6% 71.4%
3500573 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.60 43.0 2.82e-01 77.1% 19.4%
4441682 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 43.0 2.76e-01 77.1% 55.8%
3494383 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.59 42.0 2.70e-01 77.1% 16.4%
3660731 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.53 42.0 3.11e-01 92.9% 34.3%
5012485 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.52 40.0 3.99e-01 82.9% 92.0%
3926536 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 42.0 2.75e-01 92.9% 22.7%
4466666 3880.1.1.2 ↗ beta barrels › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glyco_hydro127C 0.51 43.0 3.70e-01 100.0% 91.9%
4282230 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 36.0 3.14e-01 74.3% 61.0%
3477448 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 43.0 3.13e-01 92.9% 35.3%
3217156 243.1.1.46 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 0.50 36.0 2.85e-01 74.3% 88.6%