←Back to structures

NC_071019.1__YP_010677229.1__PQD75_gp023__00023

Bact-Vir

NC_071019.1__YP_010677229.1__PQD75_gp023__00023

Identity

Accession:
NC_071019 ↗
Kingdom:
phage

Quality

61.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bixiavirus› Stenotrophomonas_phage_vB_SmaS_BUCT548

TaxID: 2712941

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-157
PDB
Domain cluster: rep: OQ957557.1__WKV24423.1__X__00014__D1-167
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 43.0 4.80e-01 91.5% 99.1%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.57 40.0 4.43e-01 77.8% 88.6%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 30.0 3.26e-01 75.2% 59.2%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.56 40.0 4.38e-01 79.1% 88.3%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 29.0 2.73e-01 90.2% 39.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 25.0 3.59e-01 84.3% 95.7%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.53 41.0 4.01e-01 81.0% 88.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 35.0 3.88e-01 81.0% 85.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970846 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 38.0 5.09e-01 77.8% 97.5%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.70 33.0 4.63e-01 86.3% 90.7%
4336471 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.66 38.0 4.61e-01 94.1% 87.0%
3955464 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 34.0 4.30e-01 76.5% 91.1%
3289386 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 34.0 4.38e-01 81.7% 94.3%
3616990 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.88e-01 88.2% 98.2%
3285634 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 33.0 4.16e-01 81.7% 90.0%
3716770 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.58 32.0 3.84e-01 83.7% 79.0%
3961460 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 4.43e-01 85.0% 79.3%