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NC_071032.1__YP_010678238.1__PQE16_gp55__00055

Bact-Vir

NC_071032.1__YP_010678238.1__PQE16_gp55__00055

Identity

Accession:
NC_071032 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jsxA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.66 47.0 5.24e-01 97.9% 97.2%
2kyzA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 5.09e-01 100.0% 98.5%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 46.0 4.94e-01 100.0% 94.9%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.82e-01 100.0% 97.3%
2gqqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.61 45.0 4.75e-01 100.0% 88.2%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 47.0 4.95e-01 100.0% 95.2%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.60 42.0 4.45e-01 97.9% 85.0%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.60 44.0 4.76e-01 100.0% 94.8%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.59 44.0 4.72e-01 98.9% 97.4%
1scjB00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.58 40.0 4.41e-01 98.9% 93.0%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 44.0 4.54e-01 100.0% 86.5%
2cg8B02 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.58 48.0 4.26e-01 100.0% 63.6%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.59e-01 100.0% 81.6%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 46.0 4.62e-01 100.0% 87.2%
4oj3B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 4.35e-01 100.0% 81.1%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 4.34e-01 100.0% 80.2%
3ewgA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.57 40.0 4.29e-01 100.0% 88.7%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 43.0 4.67e-01 100.0% 100.0%
6c6uN00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.56 45.0 4.50e-01 97.9% 83.7%
3trgA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 4.24e-01 100.0% 80.9%
6bq9A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 41.0 4.14e-01 80.9% 78.7%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 43.0 4.45e-01 100.0% 89.9%
4dzdA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.55 38.0 4.33e-01 100.0% 97.1%
2ywwA01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.55 40.0 4.05e-01 100.0% 79.1%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 41.0 4.41e-01 98.9% 100.0%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 42.0 4.40e-01 100.0% 95.2%
7jrjK01 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.52 46.0 3.94e-01 100.0% 78.2%
1ucnA00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.52 46.0 3.98e-01 100.0% 78.1%
5xgbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 47.0 3.80e-01 100.0% 54.7%
1fjeB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 39.0 4.18e-01 97.9% 95.1%
5vn6A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.52 38.0 2.85e-01 79.8% 67.4%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 39.0 3.49e-01 79.8% 82.2%
4dz6A00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.52 45.0 3.80e-01 100.0% 81.5%
6ay1A00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.52 45.0 4.04e-01 100.0% 88.4%
2lkzA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 41.0 4.26e-01 98.9% 97.6%
3dcaA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 46.0 4.15e-01 100.0% 80.8%
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.52 41.0 3.54e-01 86.2% 81.2%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.52 34.0 2.91e-01 77.7% 40.1%
1uouA03 3.90.1170.30 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Pyrimidine nucleoside phosphorylase-like, C-terminal domain 0.51 37.0 3.86e-01 80.9% 82.0%
4ga6A04 3.90.1170.30 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Pyrimidine nucleoside phosphorylase-like, C-terminal domain 0.51 38.0 4.07e-01 81.9% 93.8%
3gp9A00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.51 44.0 4.03e-01 100.0% 89.5%
2e7jA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 40.0 3.77e-01 95.7% 70.5%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 38.0 3.36e-01 79.8% 64.5%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 43.0 4.33e-01 98.9% 96.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666212 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.65 46.0 5.15e-01 98.9% 97.1%
4211715 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.61 47.0 4.53e-01 100.0% 72.4%
3355370 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.59 47.0 4.61e-01 100.0% 81.0%
159011 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.59 45.0 4.38e-01 100.0% 74.8%
4940609 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.58 44.0 4.63e-01 100.0% 89.4%
5077308 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.58 44.0 4.26e-01 100.0% 71.4%
3567908 304.120.1.10 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF25904 0.58 40.0 4.48e-01 97.9% 98.6%
5020167 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.58 42.0 4.61e-01 97.9% 97.3%
5081105 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.58 44.0 4.33e-01 100.0% 77.0%
4996336 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 44.0 4.40e-01 100.0% 81.1%
5033558 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.57 39.0 4.36e-01 96.8% 95.7%
4969119 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.57 38.0 4.31e-01 100.0% 98.5%
4949011 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.57 43.0 4.41e-01 100.0% 85.6%
5082025 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.57 40.0 4.40e-01 97.9% 94.7%
5066741 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.57 43.0 4.47e-01 100.0% 89.4%
4936933 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.57 43.0 4.49e-01 100.0% 90.6%
4962811 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 43.0 4.55e-01 97.9% 95.0%
4084908 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 47.0 4.84e-01 100.0% 96.7%
3353617 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.56 40.0 4.26e-01 78.7% 88.7%
5060147 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.56 45.0 2.94e-01 100.0% 19.5%
4945790 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 48.0 4.64e-01 100.0% 84.8%
5038143 304.9.1.14 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF1743 0.56 46.0 4.63e-01 100.0% 89.5%
4991606 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 43.0 4.54e-01 100.0% 96.2%
3703744 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.56 49.0 3.80e-01 100.0% 91.4%
4950495 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 42.0 4.46e-01 100.0% 95.0%
4988926 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 42.0 4.29e-01 97.9% 84.3%
3592434 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.56 41.0 3.98e-01 79.8% 69.5%
3599853 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.56 49.0 3.41e-01 100.0% 71.4%
4971456 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.55 37.0 4.24e-01 96.8% 100.0%
3186904 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.55 42.0 4.27e-01 100.0% 83.9%
3789510 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 42.0 4.37e-01 100.0% 90.6%
4069972 304.120.1.2 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmM_FDX 0.55 40.0 4.37e-01 100.0% 100.0%
4256020 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.55 41.0 4.24e-01 100.0% 86.5%
3291108 304.154.1.1 a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain › GGDEF_2 0.55 41.0 3.57e-01 100.0% 50.7%
4997569 304.4.1.10 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF1330 0.55 49.0 4.94e-01 100.0% 97.9%
4983501 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 40.0 4.29e-01 97.9% 92.5%
4956118 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 42.0 4.42e-01 100.0% 94.1%
3199163 304.45.1.1 a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.54 48.0 3.96e-01 100.0% 57.1%
4965406 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.54 40.0 4.19e-01 100.0% 92.5%
5081393 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.54 41.0 4.23e-01 83.0% 100.0%
4460622 325.1.1.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like › GARS_C 0.54 45.0 4.65e-01 97.9% 97.8%
5047540 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 39.0 4.05e-01 98.9% 84.4%
4965233 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.53 39.0 4.13e-01 95.7% 91.3%
5058378 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.53 47.0 4.67e-01 100.0% 95.0%
4121888 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.53 44.0 4.51e-01 100.0% 96.7%
3993158 304.9.1.25 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_7 0.52 47.0 3.95e-01 100.0% 71.2%
5009977 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.52 36.0 4.06e-01 80.9% 100.0%
4985889 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 37.0 3.92e-01 95.7% 85.9%
3831193 304.28.1.27 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Med13_N 0.51 45.0 3.82e-01 100.0% 61.3%
3560567 304.34.1.1 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases › NDK 0.51 45.0 3.72e-01 100.0% 69.7%
4084990 304.30.1.1 a+b two layers › Alpha-beta plaits › D-ribose-5-phosphate isomerase (RpiA), lid domain › D-ribose-5-phosphate isomerase (RpiA), lid domain › Rib_5-P_isom_A 0.51 42.0 4.36e-01 96.8% 100.0%
3376635 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.51 45.0 4.32e-01 96.8% 95.5%
3723961 327.11.2.43 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29998 0.51 39.0 4.04e-01 80.9% 94.1%
3410469 304.20.1.3 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 0.51 45.0 3.97e-01 100.0% 90.0%
4147794 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.51 37.0 3.86e-01 97.9% 85.9%
3792800 304.34.1.1 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases › NDK 0.51 44.0 3.80e-01 100.0% 81.3%
4552747 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.51 44.0 4.16e-01 95.7% 89.6%
3607485 4261.1.1.2 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.50 38.0 3.27e-01 80.9% 49.0%
4224412 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.50 38.0 3.84e-01 100.0% 80.0%
4949156 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.50 37.0 4.02e-01 95.7% 98.7%
4262570 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.50 43.0 4.37e-01 98.9% 98.9%
4969104 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.50 40.0 4.20e-01 98.9% 96.5%
3383910 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.50 39.0 4.09e-01 93.6% 97.6%
4989936 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.50 44.0 3.93e-01 100.0% 95.0%
3821846 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 45.0 4.27e-01 100.0% 86.4%