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NC_071034.1__YP_010678370.1__PQE18_gp45__00045

Bact-Vir

NC_071034.1__YP_010678370.1__PQE18_gp45__00045

Identity

Accession:
NC_071034 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Manhattanvirus› Arthrobacter_phage_DrSierra

TaxID: 2704034

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-122
PDB
Domain cluster: rep: IMGVR_UViG_3300028601_000785-3300028601-Ga0265295_100223635__D1-73
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gduA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 35.0 2.49e-01 71.9% 67.5%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.51 27.0 2.57e-01 78.1% 37.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 29.0 3.49e-01 77.1% 66.2%
3910122 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.56 39.0 4.45e-01 75.0% 100.0%
D2 medium residues 123-181
PDB
Domain cluster: rep: NC_015938.1__YP_004782441.1__SaPh711_gp066__00066__D27-90
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.82 59.0 4.99e-01 84.7% 47.9%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.78 61.0 6.42e-01 83.1% 94.4%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 53.0 3.94e-01 81.4% 31.9%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 50.0 4.34e-01 78.0% 47.7%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 59.0 4.57e-01 86.4% 47.2%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.63 55.0 4.95e-01 94.9% 88.5%
5fb0C01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 43.0 4.33e-01 88.1% 72.1%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 45.0 4.41e-01 96.6% 75.4%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.54 35.0 3.94e-01 79.7% 90.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.86 60.0 4.24e-01 76.3% 26.1%
3255227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.85 60.0 5.00e-01 79.7% 45.3%
3326051 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.84 61.0 5.09e-01 84.7% 47.4%
1002459 378.1.1.13 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.83 61.0 6.46e-01 76.3% 94.2%
3788517 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.82 60.0 4.53e-01 81.4% 34.6%
3438467 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 59.0 5.01e-01 79.7% 48.9%
3430765 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.82 61.0 5.02e-01 84.7% 46.0%
3397474 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.82 54.0 6.40e-01 74.6% 100.0%
5042937 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.81 56.0 5.78e-01 79.7% 76.4%
3199914 377.1.1.22 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Stc1 0.81 53.0 6.38e-01 72.9% 100.0%
5061253 376.1.3.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.80 55.0 4.89e-01 79.7% 52.5%
3924159 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 55.0 4.74e-01 78.0% 47.8%
3702126 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.79 56.0 4.90e-01 83.1% 51.8%
3720327 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 55.0 4.62e-01 79.7% 44.0%
3881136 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 50.0 5.44e-01 79.7% 80.0%
3634446 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 45.0 5.15e-01 74.6% 80.0%
3869401 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.75 58.0 4.32e-01 83.1% 35.0%
3636589 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 53.0 4.60e-01 81.4% 50.0%
4957868 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 43.0 5.36e-01 71.2% 100.0%
3606495 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 49.0 4.75e-01 71.2% 64.1%
3717537 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.72 46.0 4.76e-01 74.6% 70.9%
3401103 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 55.0 4.54e-01 83.1% 49.0%
3706927 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.70 48.0 4.77e-01 71.2% 76.7%
3211002 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 50.0 4.73e-01 76.3% 88.6%
3705738 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 52.0 5.18e-01 79.7% 78.3%
3938379 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 50.0 4.90e-01 81.4% 75.4%
3252718 377.1.1.96 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF25999 0.67 42.0 4.92e-01 76.3% 95.0%
4056277 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.67 43.0 4.16e-01 72.9% 60.0%
3912396 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.66 48.0 4.94e-01 84.7% 81.8%
3846283 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 46.0 4.95e-01 81.4% 88.0%
3225705 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 45.0 5.10e-01 76.3% 95.6%
5049855 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 44.0 4.43e-01 79.7% 71.7%
4466003 376.1.3.44 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.64 44.0 4.27e-01 76.3% 63.1%
3733728 376.1.3.31 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.63 49.0 4.47e-01 84.7% 97.5%
2428742 3961.1.1.0 ↗ 0.62 51.0 4.01e-01 93.2% 65.4%
3219652 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 42.0 3.04e-01 74.6% 24.7%
3700533 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 3.09e-01 88.1% 81.9%
4967026 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.59 43.0 4.20e-01 79.7% 86.2%
3333897 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.58 43.0 3.87e-01 81.4% 57.5%
3300469 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.58 39.0 4.09e-01 74.6% 82.0%
3733350 2004.1.1.686 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, DEAD, Helicase_C 0.58 41.0 2.37e-01 76.3% 8.0%
3177203 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.57 36.0 3.96e-01 72.9% 84.4%
3411509 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 38.0 4.22e-01 71.2% 93.3%
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 44.0 4.27e-01 84.7% 90.8%
D3 medium residues 182-269
PDB