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NC_071035.1__YP_010678440.1__PQE19_gp59__00049

Bact-Vir

NC_071035.1__YP_010678440.1__PQE19_gp59__00049

Identity

Accession:
NC_071035 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casidaviridae› Galvastonvirus› Arthrobacter_phage_Tweety19

TaxID: 2768133

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-66
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.69 47.0 4.48e-01 71.2% 60.3%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.79e-01 80.3% 67.1%
3i4uA01 1.20.120.1080 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 41.0 3.68e-01 77.3% 43.3%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 36.0 3.59e-01 98.5% 53.5%
5k2xA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 42.0 2.56e-01 71.2% 51.2%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.60 42.0 2.57e-01 72.7% 84.4%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.57 40.0 4.03e-01 71.2% 76.9%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.57 44.0 3.43e-01 83.3% 48.2%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 40.0 3.14e-01 74.2% 93.4%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.51 36.0 3.60e-01 100.0% 72.9%
3rfyA02 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.51 41.0 3.53e-01 89.4% 92.5%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.50 39.0 3.66e-01 92.4% 68.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3365302 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 54.0 3.46e-01 71.2% 17.5%
3909150 5063.1.1.15 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA 0.76 52.0 5.00e-01 71.2% 76.0%
3252296 601.55.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 › NCA2 0.76 58.0 5.03e-01 80.3% 91.6%
4170537 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.73 51.0 4.05e-01 72.7% 36.9%
5061943 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.72 48.0 3.85e-01 74.2% 36.0%
3591291 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.69 49.0 3.49e-01 75.8% 25.6%
3708129 603.5.1.0 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like 0.68 50.0 3.89e-01 78.8% 44.0%
4149728 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.68 48.0 4.50e-01 75.8% 60.0%
4358519 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.68 48.0 4.17e-01 75.8% 48.0%
4947351 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.67 47.0 3.52e-01 75.8% 30.9%
3171499 11.45.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › IBP (ice-binding protein) RIII_3 domain › IBP (ice-binding protein) RIII_3 domain › EMP70 0.66 51.0 3.89e-01 84.8% 59.4%
3314379 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.64 50.0 4.98e-01 84.8% 91.4%
3449605 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.61 39.0 3.31e-01 98.5% 40.0%
3261624 3470.1.1.0 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.60 39.0 4.36e-01 71.2% 90.0%
None — 0.54 38.0 2.82e-01 75.8% 27.9%
3940779 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 39.0 3.41e-01 80.3% 75.2%
4211233 4120.1.1.60 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › GlutR_dimer 0.52 40.0 3.79e-01 84.8% 78.8%
5044572 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.51 42.0 3.61e-01 90.9% 69.5%
3331225 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.51 38.0 3.78e-01 80.3% 78.6%
3286725 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 39.0 2.88e-01 100.0% 30.3%