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NC_071039.1__YP_010678854.1__PQE65_gp360__00121

Bact-Vir

NC_071039.1__YP_010678854.1__PQE65_gp360__00121

Identity

Accession:
NC_071039 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arenbergviridae› Wroclawvirus› Pseudomonas_phage_vB_PaeM_PA5oct

TaxID: 2163605

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-113
PDB
Domain cluster: rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00139__D5-107
D2 high residues 120-291
PDB
Domain cluster: rep: IMGVR_UViG_3300035145_002450-3300035145-Ga0373595_0009153_3868_5049__D175-392
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.78 51.0 5.84e-01 98.8% 86.9%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 43.0 4.38e-01 100.0% 63.4%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 26.0 3.15e-01 70.9% 52.2%
3wmqA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 37.0 4.76e-01 88.4% 95.7%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.67 39.0 4.54e-01 100.0% 81.5%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.62 37.0 4.42e-01 94.2% 87.8%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.60 40.0 3.51e-01 91.3% 45.8%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.59 38.0 3.40e-01 100.0% 44.8%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 47.0 3.94e-01 83.7% 75.4%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.58 42.0 4.67e-01 93.0% 92.1%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 4.83e-01 91.9% 97.8%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.57 33.0 3.87e-01 86.0% 81.9%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.57 39.0 4.33e-01 92.4% 86.9%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.56 31.0 3.32e-01 89.5% 61.5%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 32.0 3.77e-01 87.2% 81.7%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 50.0 4.52e-01 100.0% 80.8%
1cwpA00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.54 41.0 4.40e-01 94.2% 91.9%
4llfD01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 4.19e-01 100.0% 79.8%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 30.0 3.64e-01 77.3% 88.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 4.14e-01 82.0% 99.4%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 4.40e-01 100.0% 83.7%
1f15B00 2.60.120.530 Mainly Beta › Sandwich › Jelly Rolls › Cucumovirus coat protein, subunit A 0.51 42.0 4.06e-01 93.6% 77.9%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 4.25e-01 84.9% 97.2%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 40.0 4.10e-01 82.6% 91.0%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 40.0 4.16e-01 83.7% 97.5%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 4.03e-01 93.6% 82.9%
5j09A00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.50 39.0 4.00e-01 100.0% 83.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971476 2499.1.1.0 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.77 50.0 3.85e-01 99.4% 31.1%
1833430 2499.1.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.77 51.0 3.65e-01 98.3% 25.0%
3841027 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.77 45.0 4.73e-01 100.0% 63.9%
4975805 2499.1.1.0 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.76 53.0 3.69e-01 98.8% 23.9%
4218569 10.32.1.301 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › InhA-like_MAM 0.76 45.0 4.62e-01 100.0% 60.0%
3554445 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.74 45.0 4.61e-01 100.0% 61.2%
3406485 1181.1.1.0 ↗ 0.74 23.0 3.71e-01 71.5% 70.0%
3581843 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.74 45.0 4.60e-01 100.0% 62.4%
5056930 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 44.0 4.66e-01 100.0% 66.5%
3588938 10.2.1.89 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 0.70 47.0 4.74e-01 99.4% 68.2%
3678413 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.68 45.0 4.19e-01 100.0% 54.3%
3736741 222.1.1.10 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.67 25.0 3.68e-01 70.3% 73.8%
5059640 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.67 41.0 4.67e-01 100.0% 80.8%
3236803 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.66 41.0 5.12e-01 91.9% 100.0%
5039775 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 50.0 4.76e-01 100.0% 68.7%
3816212 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.65 45.0 4.14e-01 100.0% 55.8%
3543937 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.64 39.0 4.23e-01 100.0% 71.0%
3456722 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.64 44.0 4.30e-01 100.0% 63.2%
3831061 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.64 48.0 4.59e-01 100.0% 67.0%
4930609 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 43.0 4.69e-01 91.9% 83.6%
3259568 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 40.0 4.57e-01 100.0% 89.6%
3676352 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.61 48.0 4.69e-01 100.0% 76.2%
5033265 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 44.0 4.61e-01 100.0% 82.5%
5038083 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.60 37.0 4.30e-01 86.0% 85.5%
3292017 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.59 34.0 4.08e-01 89.0% 83.5%
3599881 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 35.0 3.77e-01 76.2% 69.0%
3258412 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 37.0 4.10e-01 100.0% 80.7%
4051210 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.58 46.0 3.92e-01 83.7% 76.7%
4188370 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 45.0 3.86e-01 83.7% 78.2%
3886734 331.4.1.7 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.56 42.0 4.34e-01 91.9% 80.6%
3687869 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 38.0 4.06e-01 83.7% 80.0%
5074892 11.1.5.132 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF11 0.55 35.0 4.13e-01 100.0% 91.7%
3252755 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 38.0 4.27e-01 91.9% 94.6%
3686933 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 36.0 3.65e-01 83.1% 67.4%
3252754 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 37.0 4.17e-01 93.0% 94.6%
3016724 244.1.1.12 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Smoa_sbd 0.53 32.0 3.98e-01 90.1% 99.0%
3805014 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.52 43.0 4.51e-01 87.8% 100.0%
1316606 10.1.1.34 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF3472 0.52 48.0 4.13e-01 100.0% 69.9%
4074306 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 36.0 3.84e-01 90.7% 78.7%
5051305 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 4.13e-01 90.1% 97.6%
5047051 5.1.4.663 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.52 37.0 2.89e-01 72.7% 96.2%
3280871 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.52 42.0 4.36e-01 87.8% 99.4%
3653591 331.2.1.7 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM1_C_vert_fung 0.50 40.0 4.34e-01 89.5% 100.0%
4943486 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 35.0 4.02e-01 90.7% 98.4%
5027267 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 41.0 4.37e-01 90.7% 99.3%
4579173 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.50 40.0 3.72e-01 82.6% 74.6%
D3 high residues 299-405
PDB