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NC_071040.1__YP_010679273.1__PQE66_gp095__00095

Bact-Vir

NC_071040.1__YP_010679273.1__PQE66_gp095__00095

Identity

Accession:
NC_071040 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Haetaevirus› Bacillus_phage_PBC2

TaxID: 1675029

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
Domain cluster: rep: NC_071040.1__YP_010679273.1__PQE66_gp095__00095__D81-136
D2 high residues 81-136
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 64.0 5.72e-01 100.0% 71.8%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 4.89e-01 96.4% 100.0%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.67 59.0 5.05e-01 100.0% 80.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 46.0 4.81e-01 98.2% 93.8%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.68e-01 100.0% 90.0%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.61 38.0 3.98e-01 73.2% 68.6%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.90e-01 100.0% 87.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.63e-01 100.0% 72.9%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 5.09e-01 100.0% 98.1%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.59 37.0 3.81e-01 73.2% 66.0%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 36.0 3.74e-01 73.2% 68.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.18e-01 98.2% 72.5%
1b3qB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.05e-01 85.7% 97.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.51e-01 100.0% 90.9%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.55 43.0 3.88e-01 94.6% 86.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.22e-01 96.4% 82.3%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 4.03e-01 87.5% 79.1%
1vefA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 36.0 2.76e-01 91.1% 26.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.28e-01 98.2% 86.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.20e-01 100.0% 74.6%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.54 43.0 4.20e-01 94.6% 86.4%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.54e-01 92.9% 35.9%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 3.45e-01 94.6% 95.0%
5towB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 37.0 2.77e-01 75.0% 38.1%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 44.0 2.86e-01 100.0% 37.5%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 43.0 3.48e-01 98.2% 66.1%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 34.0 2.72e-01 83.9% 28.4%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 3.31e-01 94.6% 94.9%
4emiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.97e-01 94.6% 59.7%
1n9pA00 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.51 37.0 2.57e-01 78.6% 51.8%
2gv8A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 3.41e-01 94.6% 99.0%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 3.93e-01 96.4% 90.3%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 38.0 3.22e-01 91.1% 99.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3523918 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.72 59.0 5.69e-01 100.0% 78.5%
3705484 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.71 47.0 4.81e-01 100.0% 70.9%
3714918 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.70 47.0 4.79e-01 100.0% 70.9%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.70 61.0 4.88e-01 98.2% 92.9%
4163347 3681.1.1.0 ↗ a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit 0.70 51.0 3.95e-01 100.0% 35.8%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.83e-01 100.0% 88.3%
3930456 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.15e-01 100.0% 78.5%
4043931 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.64 43.0 4.26e-01 76.8% 66.7%
4458401 375.1.1.17 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1f 0.63 50.0 3.23e-01 100.0% 18.2%
3611744 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.63 50.0 3.58e-01 92.9% 68.1%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 45.0 3.28e-01 96.4% 26.3%
4083915 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 4.70e-01 100.0% 72.0%
3710624 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.62e-01 94.6% 64.2%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.72e-01 100.0% 85.0%
3190184 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.60 48.0 4.14e-01 92.9% 66.3%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.71e-01 96.4% 85.0%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 46.0 4.36e-01 96.4% 70.0%
4186983 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.60 47.0 4.36e-01 100.0% 68.0%
2106031 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.60 38.0 3.82e-01 78.6% 62.7%
4091771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.73e-01 100.0% 85.0%
4195627 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.59 47.0 4.52e-01 100.0% 78.5%
4072405 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.59 46.0 4.28e-01 100.0% 68.0%
3590813 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 43.0 4.49e-01 96.4% 96.0%
4032637 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 44.0 4.48e-01 89.3% 98.2%
3396594 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.54e-01 100.0% 86.7%
3990001 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.57 43.0 4.38e-01 87.5% 100.0%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.56 46.0 4.56e-01 100.0% 88.3%
4176722 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.56 44.0 3.80e-01 92.9% 88.0%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.55 43.0 4.36e-01 100.0% 89.1%
4284778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.55 45.0 4.19e-01 100.0% 73.3%
3631669 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 44.0 2.82e-01 92.9% 34.2%
3215500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.39e-01 92.9% 92.7%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.55 43.0 4.43e-01 100.0% 94.3%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.54 42.0 4.03e-01 100.0% 75.4%
3067454 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.54 42.0 2.85e-01 92.9% 62.1%
1487666 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 42.0 4.30e-01 92.9% 100.0%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.53 43.0 4.01e-01 100.0% 70.7%
3717498 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 2.94e-01 94.6% 62.0%
3429282 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.52 39.0 3.31e-01 87.5% 60.6%
3183621 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.52 41.0 2.51e-01 94.6% 35.3%
3280837 3982.1.1.1 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 0.52 44.0 3.86e-01 100.0% 86.7%
3693022 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.52 41.0 2.72e-01 94.6% 46.2%
3588972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 38.0 3.93e-01 100.0% 87.0%
3696916 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.51 40.0 2.47e-01 94.6% 35.1%
5015030 242.2.1.1 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › DUF61 0.51 35.0 3.36e-01 75.0% 80.0%
3189228 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 41.0 2.48e-01 94.6% 36.5%
3781209 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.50 42.0 3.61e-01 100.0% 61.0%