←Back to structures

NC_071040.1__YP_010679340.1__PQE66_gp162__00162

Bact-Vir

NC_071040.1__YP_010679340.1__PQE66_gp162__00162

Identity

Accession:
NC_071040 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Haetaevirus› Bacillus_phage_PBC2

TaxID: 1675029

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-81
PDB
Domain cluster: rep: BML_coassembly_scaffold_108_prodigal-single.1__X__X__00082__D3-91
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 60.0 5.80e-01 98.8% 78.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 5.14e-01 97.5% 95.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 54.0 5.24e-01 98.8% 73.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 64.0 5.49e-01 97.5% 75.4%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 56.0 5.38e-01 98.8% 74.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 43.0 4.99e-01 98.8% 92.6%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.68 61.0 5.19e-01 98.8% 93.0%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 5.21e-01 97.5% 74.8%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.67 47.0 4.75e-01 73.8% 85.2%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 40.0 4.44e-01 98.8% 81.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 52.0 5.12e-01 98.8% 80.5%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 56.0 5.08e-01 98.8% 75.0%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.63 55.0 5.01e-01 98.8% 97.3%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 55.0 4.43e-01 98.8% 72.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.78e-01 97.5% 100.0%
3weoA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.60 44.0 3.15e-01 78.8% 70.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.66e-01 98.8% 98.3%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.45e-01 98.8% 79.7%
1i2mB00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.58 49.0 3.26e-01 98.8% 97.9%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.65e-01 98.8% 100.0%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.28e-01 98.8% 60.4%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 50.0 4.20e-01 98.8% 100.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 50.0 4.10e-01 98.8% 91.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 40.0 4.47e-01 98.8% 100.0%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 50.0 4.73e-01 98.8% 94.7%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 38.0 3.64e-01 92.5% 61.8%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 49.0 3.83e-01 98.8% 87.5%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 48.0 4.46e-01 96.2% 100.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 4.38e-01 100.0% 100.0%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.14e-01 96.2% 100.0%
3u6xS00 2.60.40.3320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 4.34e-01 100.0% 78.1%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.54 41.0 3.50e-01 98.8% 51.2%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 49.0 3.13e-01 98.8% 98.6%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 3.85e-01 100.0% 81.2%
2kmwA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.67e-01 80.0% 78.8%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 49.0 3.17e-01 100.0% 91.9%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.53 47.0 4.49e-01 100.0% 93.6%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 46.0 3.57e-01 100.0% 84.7%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 35.0 3.67e-01 96.2% 79.7%
3fwlA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 46.0 2.95e-01 100.0% 64.7%
3a2eA00 3.30.430.20 Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif 0.52 38.0 3.49e-01 78.8% 89.8%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.52 37.0 3.15e-01 76.2% 74.5%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.89e-01 93.8% 36.2%
6frlA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 2.61e-01 91.3% 65.4%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 41.0 3.78e-01 88.7% 85.4%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 43.0 2.89e-01 97.5% 93.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3498575 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.74 56.0 5.17e-01 98.8% 64.0%
3276072 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.73 59.0 5.40e-01 97.5% 66.7%
3750303 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.72 65.0 4.69e-01 97.5% 62.8%
5081361 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 58.0 5.40e-01 98.8% 71.0%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.71 46.0 4.78e-01 98.8% 72.6%
3628889 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.70 56.0 3.79e-01 98.8% 23.5%
3304627 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 42.0 4.92e-01 98.8% 90.9%
3992373 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.67 48.0 4.52e-01 75.0% 67.4%
3520640 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 56.0 4.23e-01 98.8% 39.5%
4351616 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.66 47.0 4.14e-01 75.0% 70.0%
4322675 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.65 50.0 4.50e-01 97.5% 60.0%
3508939 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.65 57.0 4.86e-01 98.8% 61.5%
3567195 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 57.0 4.40e-01 97.5% 45.7%
3587590 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.64 34.0 3.11e-01 97.5% 39.0%
3599019 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 56.0 4.97e-01 98.8% 93.9%
3600529 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 55.0 5.06e-01 97.5% 97.1%
3281771 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.62 54.0 4.91e-01 98.8% 93.6%
3800237 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 4.70e-01 100.0% 76.0%
4949985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 4.61e-01 95.0% 78.8%
3939408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.70e-01 98.8% 92.3%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.37e-01 97.5% 78.7%
4878827 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 42.0 4.70e-01 97.5% 95.2%
3948079 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.59 51.0 4.53e-01 98.8% 92.5%
3554293 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 41.0 4.49e-01 98.8% 90.8%
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.58 45.0 4.70e-01 98.8% 89.3%
3268695 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 53.0 3.22e-01 100.0% 92.8%
3520126 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.57 52.0 3.34e-01 100.0% 99.7%
5045528 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 51.0 3.39e-01 100.0% 90.0%
3166905 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.55 51.0 3.35e-01 100.0% 91.0%
3410421 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.55 40.0 3.39e-01 78.8% 68.6%
5080350 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.05e-01 93.8% 99.1%
5037155 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.01e-01 100.0% 88.2%
5001911 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.54 49.0 3.24e-01 100.0% 92.7%
3794471 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.54 48.0 3.09e-01 97.5% 91.8%
3903171 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 47.0 3.14e-01 97.5% 99.4%
4028659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 43.0 4.36e-01 98.8% 90.0%
162525 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 37.0 3.48e-01 98.8% 57.8%
3743579 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 46.0 3.11e-01 96.2% 99.7%
3396675 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.53 46.0 3.76e-01 98.8% 69.7%
3621408 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.53 47.0 3.14e-01 100.0% 92.6%
3739678 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.53 47.0 2.98e-01 100.0% 77.3%
3924601 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.52 47.0 3.13e-01 100.0% 95.7%
3207083 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.52 46.0 2.99e-01 100.0% 82.4%
3716791 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 47.0 3.12e-01 100.0% 99.4%
3507351 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.63e-01 85.0% 91.9%
3584917 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 45.0 3.08e-01 97.5% 99.3%
3176337 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 2.95e-01 98.8% 97.6%
3268322 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.51 45.0 2.96e-01 100.0% 88.3%
3216630 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.92e-01 100.0% 95.2%
148788 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.50 43.0 2.89e-01 97.5% 93.3%