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NC_071041.1__YP_010679660.1__PQE67_gp073__00231

Bact-Vir

NC_071041.1__YP_010679660.1__PQE67_gp073__00231

Identity

Accession:
NC_071041 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirovvirus› Bacillus_phage_Kirov

TaxID: 2783539

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.65 37.0 3.33e-01 100.0% 37.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 44.0 3.84e-01 74.1% 97.8%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.63 44.0 4.62e-01 100.0% 88.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 42.0 3.69e-01 74.1% 94.7%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.60 54.0 4.75e-01 100.0% 72.3%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.59 43.0 3.79e-01 100.0% 51.7%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 39.0 2.98e-01 100.0% 29.9%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.52e-01 84.5% 66.2%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 48.0 3.73e-01 100.0% 61.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 44.0 3.30e-01 100.0% 30.5%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 3.87e-01 100.0% 89.8%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 3.59e-01 100.0% 39.4%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 41.0 3.19e-01 81.0% 83.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 42.0 3.57e-01 100.0% 45.9%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 35.0 3.24e-01 100.0% 47.5%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 48.0 3.99e-01 100.0% 58.8%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 3.84e-01 100.0% 80.6%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 47.0 4.79e-01 98.3% 100.0%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 35.0 3.23e-01 72.4% 46.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.53 43.0 3.44e-01 91.4% 95.8%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.81e-01 100.0% 57.8%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.11e-01 100.0% 35.0%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 38.0 3.01e-01 81.0% 100.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 45.0 3.77e-01 100.0% 53.2%
2esvD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.76e-01 100.0% 53.2%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 36.0 3.29e-01 75.9% 91.1%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.52 36.0 3.42e-01 100.0% 57.9%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.27e-01 75.9% 100.0%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.52 43.0 3.78e-01 100.0% 85.6%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.21e-01 100.0% 46.9%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.33e-01 100.0% 48.1%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.51 37.0 3.49e-01 81.0% 70.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.28e-01 100.0% 44.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 40.0 3.27e-01 100.0% 44.8%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.03e-01 100.0% 36.8%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 3.25e-01 100.0% 55.1%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.12e-01 100.0% 39.4%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.50 31.0 2.58e-01 100.0% 30.1%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3206618 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 46.0 3.10e-01 81.0% 80.4%
5022394 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 55.0 4.34e-01 100.0% 95.8%
3416069 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 45.0 4.27e-01 86.2% 65.7%
4109482 223.1.1.182 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3369 0.61 44.0 3.24e-01 79.3% 81.8%
3975705 3115.6.1.0 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.60 39.0 4.16e-01 100.0% 80.0%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.60 40.0 4.37e-01 100.0% 91.1%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 39.0 4.14e-01 100.0% 88.9%
3958896 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.59 41.0 4.16e-01 98.3% 75.0%
3289401 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 43.0 3.40e-01 100.0% 36.2%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 39.0 4.25e-01 100.0% 91.1%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.58 39.0 4.06e-01 100.0% 80.0%
3838472 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.58 44.0 2.99e-01 87.9% 48.5%
5747 4007.1.1.1 ↗ a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.58 41.0 4.18e-01 100.0% 83.3%
3711220 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.58 47.0 4.60e-01 94.8% 95.4%
4961379 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.57 43.0 2.95e-01 100.0% 20.9%
3367439 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 40.0 2.69e-01 74.1% 59.2%
3607227 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.57 43.0 4.57e-01 96.6% 96.0%
3254632 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 48.0 4.66e-01 98.3% 98.5%
2559791 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.56 43.0 3.70e-01 100.0% 51.6%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.56 38.0 4.05e-01 100.0% 93.3%
3998052 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.56 50.0 3.96e-01 100.0% 86.1%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.46e-01 100.0% 94.7%
5078886 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 40.0 3.35e-01 79.3% 73.6%
3200355 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.55 42.0 3.74e-01 86.2% 91.1%
4459724 221.9.1.1 ↗ a+b two layers › beta-Grasp › N-terminal domain of bypass of forespore C, BofC › N-terminal domain of bypass of forespore C, BofC › BOFC_N 0.55 40.0 3.89e-01 81.0% 83.1%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 38.0 4.01e-01 100.0% 90.0%
4089566 3857.1.1.1 ↗ beta sandwiches › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head_binding 0.55 38.0 3.23e-01 100.0% 44.2%
5041529 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.55 46.0 3.81e-01 100.0% 88.5%
3578579 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 48.0 3.80e-01 100.0% 86.7%
None — 0.53 42.0 2.67e-01 86.2% 91.4%
3997614 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.31e-01 87.9% 56.7%
5052968 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.52 38.0 2.42e-01 82.8% 13.6%
3827784 304.4.1.64 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › zf-CCHC_4 0.52 40.0 3.47e-01 87.9% 75.0%
4541862 101.1.2.59 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF480 0.52 39.0 3.20e-01 86.2% 55.2%
3621133 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 2.88e-01 100.0% 95.6%
3362575 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 40.0 2.33e-01 86.2% 45.3%
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.20e-01 98.3% 98.5%
4931464 822.3.1.0 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 0.51 40.0 3.78e-01 100.0% 73.3%
3963143 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 37.0 3.21e-01 82.8% 94.2%
2472915 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.51 38.0 2.62e-01 89.7% 92.2%
3998546 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.29e-01 100.0% 98.3%
5053654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 45.0 3.53e-01 100.0% 58.3%
3234045 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.50 43.0 3.47e-01 100.0% 87.5%