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NC_071041.1__YP_010679692.1__PQE67_gp041__00263

Bact-Vir

NC_071041.1__YP_010679692.1__PQE67_gp041__00263

Identity

Accession:
NC_071041 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-79
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.73 60.0 6.26e-01 95.1% 100.0%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.73 64.0 6.03e-01 98.4% 100.0%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.72 63.0 6.25e-01 98.4% 100.0%
3arxA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.71 61.0 5.49e-01 96.7% 100.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.70 61.0 5.40e-01 98.4% 98.9%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.70 58.0 5.65e-01 98.4% 83.6%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.69 60.0 5.80e-01 98.4% 100.0%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.69 60.0 5.17e-01 98.4% 100.0%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.69 59.0 5.77e-01 96.7% 100.0%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.68 61.0 6.02e-01 100.0% 100.0%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.89e-01 86.9% 77.6%
4uriA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.67 57.0 5.86e-01 100.0% 100.0%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.66 57.0 5.44e-01 98.4% 95.9%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.66 56.0 5.74e-01 93.4% 100.0%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.43e-01 83.6% 64.8%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.65 48.0 4.63e-01 93.4% 69.0%
1w9pA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 57.0 5.65e-01 98.4% 100.0%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.64 50.0 4.02e-01 83.6% 90.4%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 3.64e-01 88.5% 34.2%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 3.82e-01 88.5% 39.4%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.17e-01 83.6% 68.5%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 46.0 3.71e-01 83.6% 71.7%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.04e-01 100.0% 71.4%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.72e-01 88.5% 42.3%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 39.0 3.86e-01 100.0% 62.1%
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 37.0 3.06e-01 100.0% 32.2%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.45e-01 88.5% 34.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.52e-01 83.6% 46.8%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.59e-01 88.5% 40.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 46.0 4.08e-01 90.2% 100.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 45.0 3.42e-01 90.2% 95.8%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 49.0 4.39e-01 100.0% 76.1%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 44.0 3.69e-01 90.2% 88.9%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.34e-01 83.6% 47.1%
1mkyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 40.0 3.11e-01 91.8% 31.6%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 49.0 4.09e-01 100.0% 68.8%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.26e-01 100.0% 67.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 37.0 3.62e-01 75.4% 61.1%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 45.0 3.94e-01 93.4% 60.9%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.10e-01 100.0% 71.9%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.54 42.0 3.21e-01 88.5% 55.1%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.68e-01 100.0% 93.7%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 47.0 4.09e-01 100.0% 63.4%
1ru8A02 3.90.1490.10 Alpha Beta › Alpha-Beta Complex › putative n-type atp pyrophosphatase, domain 2 › putative n-type atp pyrophosphatase, domain 2 0.54 39.0 3.47e-01 98.4% 52.7%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.65e-01 100.0% 72.7%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 42.0 3.76e-01 93.4% 61.6%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.52 40.0 2.90e-01 83.6% 27.4%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 2.88e-01 100.0% 98.0%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 38.0 3.22e-01 83.6% 43.5%
3ajdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 39.0 2.88e-01 86.9% 98.5%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 42.0 3.37e-01 100.0% 86.8%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 44.0 3.56e-01 100.0% 67.2%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 38.0 2.87e-01 88.5% 33.3%
1xmbA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 39.0 2.65e-01 88.5% 69.3%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 2.92e-01 86.9% 48.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934650 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.79 60.0 6.45e-01 91.8% 100.0%
3511074 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.78 63.0 3.94e-01 100.0% 17.0%
4489484 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.77 55.0 3.26e-01 100.0% 10.7%
3225850 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.77 58.0 6.31e-01 96.7% 100.0%
3790317 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.75 59.0 3.63e-01 100.0% 14.9%
2594390 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.74 64.0 6.09e-01 96.7% 100.0%
3520514 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.72 64.0 3.84e-01 96.7% 18.9%
4883688 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.72 62.0 5.82e-01 96.7% 98.7%
3793534 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.71 63.0 4.53e-01 100.0% 38.9%
6501 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.70 61.0 5.38e-01 96.7% 100.0%
3099009 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.70 60.0 4.50e-01 96.7% 55.2%
6500 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.70 60.0 5.69e-01 96.7% 98.6%
1106759 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.69 60.0 5.16e-01 96.7% 100.0%
3225875 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.69 61.0 3.77e-01 100.0% 20.3%
3361094 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.69 61.0 3.78e-01 100.0% 18.9%
4226159 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.69 57.0 5.34e-01 93.4% 100.0%
415434 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.68 60.0 5.78e-01 100.0% 100.0%
3518421 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.68 54.0 3.28e-01 100.0% 14.2%
3822561 284.2.1.1 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.68 59.0 5.07e-01 100.0% 72.0%
3829628 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.67 57.0 5.26e-01 96.7% 82.5%
4268439 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.67 58.0 5.07e-01 100.0% 70.5%
4261505 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.66 55.0 5.44e-01 93.4% 98.5%
4934328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 4.82e-01 82.0% 82.9%
3209839 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.65 56.0 4.85e-01 100.0% 80.0%
4659379 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.65 50.0 4.79e-01 82.0% 82.9%
4976066 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.50e-01 82.0% 88.7%
5030899 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.71e-01 82.0% 82.9%
3939202 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.64 50.0 5.06e-01 86.9% 100.0%
3975404 4137.1.1.1 a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 0.64 51.0 4.89e-01 95.1% 75.7%
4955319 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 41.0 3.91e-01 90.2% 56.0%
4193772 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.62 47.0 4.28e-01 83.6% 60.0%
4955531 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.62 54.0 3.43e-01 100.0% 82.9%
3587556 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.62 53.0 5.07e-01 100.0% 84.3%
5079044 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.46e-01 85.2% 81.3%
3629581 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.60 46.0 3.12e-01 90.2% 32.6%
5077265 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.93e-01 85.2% 56.2%
5006277 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 41.0 4.46e-01 82.0% 89.8%
3566967 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.60 50.0 4.21e-01 100.0% 55.2%
4956545 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.27e-01 86.9% 71.4%
3792816 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.58 49.0 4.04e-01 100.0% 60.8%
3244890 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 4.03e-01 100.0% 62.5%
3923930 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 47.0 4.07e-01 100.0% 66.4%
3655450 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.57 44.0 2.69e-01 88.5% 28.2%
3616581 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.57 48.0 3.10e-01 100.0% 47.3%
3602910 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 49.0 4.30e-01 96.7% 85.6%
3253518 5.1.4.179 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.56 50.0 3.09e-01 100.0% 99.5%
3403222 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.56 48.0 3.62e-01 100.0% 40.7%
3742968 223.5.1.0 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.56 49.0 4.63e-01 100.0% 85.3%
4955758 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.55 47.0 3.16e-01 100.0% 26.3%
3223920 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 44.0 4.13e-01 88.5% 82.7%
3281771 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.54 46.0 3.90e-01 100.0% 88.2%
4014374 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 47.0 4.16e-01 100.0% 68.2%
5027198 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.54 45.0 3.69e-01 98.4% 50.9%
3510576 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 45.0 4.15e-01 98.4% 71.2%
4936584 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 45.0 3.91e-01 98.4% 60.0%
4943894 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 45.0 3.90e-01 98.4% 60.0%
4998500 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 46.0 3.81e-01 100.0% 55.2%
4941554 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 44.0 3.75e-01 98.4% 56.0%
5051705 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 45.0 3.91e-01 98.4% 61.1%
3423079 5.1.4.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.53 45.0 2.92e-01 100.0% 94.2%
4279762 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 3.76e-01 90.2% 71.8%
3476370 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.50e-01 100.0% 44.8%
3594717 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 42.0 3.51e-01 100.0% 95.8%
3268750 316.1.1.56 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.50 41.0 3.15e-01 100.0% 44.6%
3332079 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 44.0 2.69e-01 100.0% 69.9%