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NC_071041.1__YP_010679702.1__PQE67_gp031__00273

Bact-Vir

NC_071041.1__YP_010679702.1__PQE67_gp031__00273

Identity

Accession:
NC_071041 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirovvirus› Bacillus_phage_Kirov

TaxID: 2783539

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-51
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.70 54.0 4.20e-01 92.9% 39.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 52.0 3.76e-01 83.3% 37.6%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.09e-01 76.2% 53.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.19e-01 76.2% 66.1%
4c8bA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.65 45.0 2.76e-01 73.8% 24.4%
2iz4A02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 40.0 4.02e-01 76.2% 59.5%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.64 44.0 2.76e-01 88.1% 12.3%
5cxxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 49.0 3.02e-01 88.1% 48.2%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 44.0 3.74e-01 78.6% 51.3%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.62 47.0 4.22e-01 92.9% 67.1%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 45.0 3.26e-01 88.1% 93.2%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 42.0 2.99e-01 76.2% 34.4%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 46.0 4.42e-01 100.0% 79.7%
2cg7A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 41.0 4.09e-01 71.4% 75.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.16e-01 92.9% 67.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 46.0 4.12e-01 100.0% 66.7%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 3.45e-01 76.2% 47.5%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 40.0 2.79e-01 71.4% 39.0%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 43.0 3.43e-01 85.7% 67.0%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 42.0 3.21e-01 92.9% 33.6%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 4.15e-01 100.0% 68.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 47.0 4.32e-01 95.2% 76.8%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.50e-01 81.0% 46.2%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.51e-01 97.6% 70.9%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 46.0 3.38e-01 97.6% 68.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 44.0 3.87e-01 92.9% 56.7%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.45e-01 100.0% 54.1%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 3.86e-01 97.6% 65.2%
1rp5A01 2.20.70.70 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 36.0 3.75e-01 81.0% 80.6%
3i6eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.35e-01 92.9% 94.2%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 3.38e-01 83.3% 60.0%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 2.93e-01 88.1% 37.0%
1f89A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 42.0 2.69e-01 100.0% 36.5%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 37.0 2.43e-01 76.2% 20.8%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 3.56e-01 92.9% 52.1%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 35.0 2.00e-01 71.4% 5.7%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 41.0 3.08e-01 97.6% 96.2%
5hc2B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.56e-01 100.0% 76.6%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.52 39.0 2.94e-01 100.0% 88.1%
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.52 35.0 2.85e-01 73.8% 56.2%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 2.91e-01 92.9% 75.6%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.25e-01 100.0% 80.0%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.71 59.0 4.95e-01 100.0% 60.0%
3478725 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 52.0 3.10e-01 85.7% 66.5%
3659428 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.69 56.0 4.30e-01 92.9% 40.2%
None — 0.67 54.0 3.66e-01 95.2% 26.5%
5002178 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.67 52.0 4.97e-01 85.7% 76.0%
4339993 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 54.0 4.39e-01 100.0% 53.3%
3271234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.45e-01 97.6% 97.8%
5053359 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 45.0 3.71e-01 73.8% 50.0%
3707788 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 51.0 3.26e-01 92.9% 36.1%
3626173 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 47.0 2.88e-01 85.7% 19.4%
3190757 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.64 50.0 4.54e-01 88.1% 80.0%
3924548 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.05e-01 97.6% 81.0%
4931302 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.63 49.0 4.70e-01 88.1% 78.0%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.63 50.0 4.54e-01 97.6% 64.6%
4231809 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 48.0 2.77e-01 95.2% 7.8%
3520328 5.1.5.152 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BBS2_N, BBS2_Mid 0.61 45.0 2.87e-01 90.5% 22.2%
4931657 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.61 50.0 4.10e-01 95.2% 62.5%
3173646 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 47.0 3.32e-01 95.2% 30.9%
3931558 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.60 47.0 2.67e-01 100.0% 7.6%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.59 45.0 4.02e-01 100.0% 62.7%
3511769 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 45.0 3.26e-01 92.9% 47.6%
4302485 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 46.0 3.26e-01 92.9% 39.3%
3703176 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 41.0 4.05e-01 76.2% 75.0%
3422909 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.58 44.0 2.86e-01 90.5% 16.9%
3668393 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.58 42.0 3.76e-01 88.1% 53.8%
4140296 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 42.0 3.11e-01 85.7% 36.4%
3587060 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 48.0 4.10e-01 100.0% 82.7%
3937661 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 47.0 4.18e-01 97.6% 69.2%
None — 0.57 47.0 2.78e-01 92.9% 42.5%
3168028 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.71e-01 90.5% 20.9%
3888390 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.70e-01 97.6% 17.1%
3478410 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 2.75e-01 97.6% 19.1%
5036655 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 45.0 4.00e-01 88.1% 61.7%
3870119 2.1.1.119 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.56 46.0 3.20e-01 100.0% 77.6%
3448973 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.56 41.0 3.43e-01 88.1% 43.8%
3640387 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 44.0 3.08e-01 92.9% 45.2%
3240041 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.55 41.0 2.54e-01 90.5% 16.6%
3719220 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 41.0 2.45e-01 97.6% 14.2%
3929337 5.1.4.303 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.55 40.0 2.59e-01 97.6% 13.4%
5038625 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.55 41.0 2.43e-01 90.5% 17.1%
4004358 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.55 39.0 3.75e-01 76.2% 78.0%
3891033 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 43.0 3.69e-01 92.9% 52.1%
3764537 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 43.0 3.62e-01 92.9% 50.0%
3952939 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.54 40.0 3.59e-01 95.2% 70.7%
4014812 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.54 41.0 3.90e-01 100.0% 71.7%
3707246 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 40.0 2.44e-01 97.6% 16.7%
3241447 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 41.0 3.17e-01 92.9% 58.3%
3519934 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.54 42.0 2.79e-01 97.6% 46.5%
3605879 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.53 39.0 3.93e-01 95.2% 80.0%
1094905 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 44.0 3.81e-01 97.6% 57.1%
3645007 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 41.0 3.36e-01 88.1% 71.8%
3709493 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 2.97e-01 90.5% 30.8%
3230195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 37.0 2.35e-01 90.5% 22.6%
3613906 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 39.0 2.44e-01 100.0% 22.4%
3257659 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 38.0 2.30e-01 83.3% 22.4%
4001937 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 40.0 2.65e-01 100.0% 18.3%
3838288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.22e-01 100.0% 90.4%
4028413 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 38.0 2.34e-01 90.5% 19.2%
4985494 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 42.0 2.48e-01 100.0% 8.8%
3479960 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 39.0 2.42e-01 97.6% 92.8%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.51 39.0 3.11e-01 90.5% 40.0%
3936276 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.51 39.0 2.61e-01 100.0% 17.8%
5016548 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.33e-01 97.6% 85.1%
4973274 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.51 37.0 3.51e-01 83.3% 70.9%
3595735 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 37.0 2.35e-01 100.0% 23.8%
3557192 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.51 42.0 2.55e-01 97.6% 15.1%
2526349 4.33.1.0 ↗ beta barrels › SH3 0.51 35.0 3.34e-01 78.6% 91.2%
3888605 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.50 38.0 3.36e-01 92.9% 52.7%
3784224 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.50 36.0 2.82e-01 88.1% 36.2%
5011439 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.50 38.0 2.87e-01 100.0% 35.2%
4961197 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.50 39.0 3.47e-01 95.2% 85.7%