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NC_071042.1__YP_010679788.1__PQE68_gp084__00084

Bact-Vir

NC_071042.1__YP_010679788.1__PQE68_gp084__00084

Identity

Accession:
NC_071042 ↗
Kingdom:
phage

Quality

64.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sophritavirus› Bacillus_phage_vB_BanS_Sophrita

TaxID: 2894790

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-76
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 50.0 4.73e-01 85.7% 77.2%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 47.0 4.64e-01 85.7% 75.8%
2h1yA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.61 48.0 4.73e-01 87.3% 98.6%
4q0cA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 46.0 4.04e-01 82.5% 98.9%
2z0rA00 3.40.1350.90 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › Uncharacterised protein PF11572, DUF3234 0.61 49.0 4.29e-01 95.2% 58.8%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 4.47e-01 82.5% 100.0%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.60 45.0 4.26e-01 81.0% 88.2%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.59 45.0 3.85e-01 84.1% 59.4%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.59 46.0 4.71e-01 85.7% 93.3%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.59 45.0 3.57e-01 84.1% 45.9%
4z9nA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 46.0 3.89e-01 84.1% 95.1%
2byeA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 4.05e-01 90.5% 76.2%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 47.0 4.75e-01 98.4% 95.1%
3dkxA01 3.40.1310.30 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.56 43.0 3.52e-01 87.3% 69.4%
2cuiA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.72e-01 87.3% 53.6%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 39.0 3.86e-01 85.7% 68.1%
2outA01 3.40.5.80 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.56 44.0 4.64e-01 87.3% 100.0%
3zyzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.49e-01 90.5% 56.1%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.54 41.0 4.19e-01 88.9% 90.5%
5u8rA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.63e-01 88.9% 65.7%
2rffA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 46.0 3.89e-01 100.0% 81.1%
1ylqA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 44.0 3.94e-01 95.2% 93.5%
1wxaA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 42.0 3.51e-01 88.9% 63.8%
1o6uA02 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.53 41.0 3.57e-01 87.3% 52.8%
2vrqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 40.0 3.21e-01 84.1% 42.4%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.53 42.0 3.57e-01 92.1% 88.4%
5eokA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.52 35.0 3.16e-01 77.8% 48.3%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.36e-01 84.1% 52.3%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.51 36.0 2.91e-01 77.8% 54.5%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.34e-01 87.3% 66.1%
2khaA01 2.60.40.2140 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-glucan-recognition protein, N-terminal domain 0.51 38.0 3.37e-01 85.7% 61.4%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 41.0 3.36e-01 96.8% 80.6%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.50 31.0 3.12e-01 84.1% 59.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3338688 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.71 55.0 5.52e-01 85.7% 95.4%
1442666 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 50.0 4.69e-01 85.7% 75.3%
4027417 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 51.0 4.99e-01 87.3% 92.9%
3634674 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.64 52.0 3.24e-01 92.1% 57.3%
3570332 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 50.0 4.14e-01 88.9% 64.3%
3929887 221.1.1.87 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.62 48.0 4.12e-01 87.3% 69.1%
3733410 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.61 46.0 2.87e-01 85.7% 15.8%
3586784 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 47.0 4.01e-01 87.3% 55.5%
3391427 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.80e-01 81.0% 100.0%
3509019 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.59 48.0 3.51e-01 96.8% 43.5%
4654177 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.59 45.0 3.08e-01 85.7% 96.7%
4030871 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.57 43.0 4.26e-01 85.7% 84.3%
3614316 1116.1.1.0 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.57 46.0 3.37e-01 90.5% 47.0%
2794885 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.57 46.0 4.64e-01 92.1% 100.0%
3950995 3380.1.1.0 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 0.57 43.0 3.93e-01 82.5% 100.0%
4886584 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.57 43.0 4.22e-01 85.7% 84.3%
2886668 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.57 42.0 4.49e-01 84.1% 100.0%
3797539 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.53e-01 88.9% 62.1%
4569253 5.1.2.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT 0.56 44.0 2.71e-01 88.9% 97.3%
4961356 1137.1.1.1 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.56 44.0 3.49e-01 87.3% 50.4%
4642338 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.56 42.0 4.52e-01 84.1% 100.0%
3089702 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.56 47.0 4.15e-01 96.8% 71.3%
4990783 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.55 45.0 3.14e-01 92.1% 79.5%
3896560 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.55 47.0 3.54e-01 100.0% 53.5%
2886666 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.55 46.0 3.67e-01 96.8% 48.9%
4973722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.67e-01 87.3% 69.5%
3831711 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 43.0 3.25e-01 96.8% 52.8%
3264859 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.56e-01 87.3% 72.4%
3595304 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 41.0 2.62e-01 87.3% 17.8%
4980391 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.53e-01 87.3% 58.1%
2794904 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.52 39.0 3.93e-01 84.1% 84.8%
3817104 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 40.0 2.84e-01 87.3% 54.4%
3204200 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 44.0 4.39e-01 98.4% 95.4%
3426463 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.43e-01 84.1% 60.0%
3475388 11.1.1.804 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 0.51 38.0 3.21e-01 87.3% 56.8%
3396686 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 41.0 3.82e-01 100.0% 83.3%
3229316 3792.1.1.1 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › RPN2_C 0.50 35.0 3.24e-01 74.6% 81.2%
3180662 3792.1.1.1 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › RPN2_C 0.50 35.0 3.27e-01 76.2% 80.0%