←Back to structures

NC_071043.1__YP_010680090.1__PQE69_gp142__00124

Bact-Vir

NC_071043.1__YP_010680090.1__PQE69_gp142__00124

Identity

Accession:
NC_071043 ↗
Kingdom:
phage

Quality

58.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sophritavirus› Bacillus_phage_pW2

TaxID: 2500559

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-50
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.61 48.0 4.53e-01 95.7% 85.7%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.61 49.0 3.70e-01 100.0% 39.8%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 46.0 4.10e-01 100.0% 72.3%
5k6wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.12e-01 100.0% 53.5%
4hwnA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.11e-01 100.0% 55.3%
3lsoA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.94e-01 100.0% 57.6%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.20e-01 87.2% 53.9%
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.54 39.0 3.24e-01 85.1% 95.2%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 3.02e-01 95.7% 45.0%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 35.0 2.83e-01 91.5% 31.5%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.50 39.0 2.81e-01 89.4% 81.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929359 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 52.0 5.01e-01 87.2% 70.9%
3891185 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 58.0 5.39e-01 100.0% 78.3%
3935475 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 3.17e-01 100.0% 26.5%
3277122 3529.1.1.6 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 0.59 38.0 4.00e-01 83.0% 80.0%
3465504 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.55 43.0 4.32e-01 97.9% 94.0%
3738582 11.1.1.598 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RSC4_Ig_like 0.55 45.0 3.29e-01 100.0% 54.0%
4944238 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.53 38.0 2.87e-01 85.1% 100.0%
4547125 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.51 41.0 4.13e-01 97.9% 92.0%
3249186 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.50 39.0 3.20e-01 100.0% 50.4%
D2 medium residues 57-126
PDB
Domain cluster: rep: ON548418.1__UUV46358.1__X__00217__D55-119
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 35.0 3.36e-01 100.0% 45.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 33.0 3.55e-01 100.0% 61.7%
1p3hB00 2.30.33.40 Mainly Beta › Roll › 10 Kd Chaperonin, Protein Cpn10; Chain O › GroES chaperonin 0.56 46.0 4.11e-01 100.0% 64.3%
3uogA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.55 43.0 3.11e-01 84.3% 58.9%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.57e-01 100.0% 71.5%
4u7mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 4.03e-01 94.3% 85.3%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.60e-01 100.0% 63.3%
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.52 36.0 3.07e-01 72.9% 87.2%
2iewB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.51 40.0 2.79e-01 88.6% 36.3%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.28e-01 85.7% 78.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3394749 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.72 65.0 4.88e-01 100.0% 54.7%
3255679 237.1.1.0 ↗ a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.72 65.0 4.57e-01 100.0% 44.8%
3359945 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.69 49.0 4.40e-01 98.6% 54.6%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.59 34.0 3.54e-01 100.0% 59.7%
3175923 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.59 45.0 4.01e-01 82.9% 93.0%
4147631 236.1.2.1 ↗ beta barrels › GroES-like › GroES-related › GroES › Cpn10 0.58 46.0 4.50e-01 84.3% 96.0%
3933872 221.1.2.16 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.50 35.0 3.17e-01 100.0% 52.0%