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NC_071044.1__YP_010680214.1__PQE70_gp076__00076

Bact-Vir

NC_071044.1__YP_010680214.1__PQE70_gp076__00076

Identity

Accession:
NC_071044 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Natevirus› Bacillus_phage_vB_BanS_Nate

TaxID: 2894788

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-81
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00041__D2-66
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.76 64.0 5.78e-01 93.2% 71.2%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.71 61.0 3.95e-01 100.0% 41.3%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 55.0 3.41e-01 89.8% 41.0%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 44.0 4.19e-01 81.4% 54.9%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.68 59.0 4.93e-01 100.0% 86.9%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.67 57.0 4.46e-01 100.0% 83.5%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 51.0 3.28e-01 83.1% 25.6%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 44.0 4.22e-01 78.0% 59.7%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 55.0 4.21e-01 98.3% 71.1%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.65 56.0 4.58e-01 100.0% 68.4%
3i2nA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 51.0 3.20e-01 88.1% 36.8%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 53.0 3.78e-01 94.9% 49.2%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.64 55.0 4.22e-01 100.0% 91.5%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.64 55.0 4.00e-01 100.0% 98.9%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 49.0 3.08e-01 86.4% 29.3%
7u5bJ01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 40.0 3.63e-01 98.3% 48.7%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 43.0 3.39e-01 74.6% 46.5%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 50.0 4.40e-01 94.9% 65.9%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.34e-01 94.9% 35.3%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 52.0 3.31e-01 100.0% 33.8%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.13e-01 94.9% 26.3%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 4.49e-01 100.0% 94.4%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.67e-01 98.3% 94.0%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.47e-01 91.5% 80.3%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.25e-01 100.0% 29.7%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 50.0 4.69e-01 98.3% 92.1%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 41.0 3.49e-01 100.0% 44.8%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 49.0 4.84e-01 100.0% 92.2%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.20e-01 100.0% 80.2%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 2.86e-01 88.1% 36.4%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 49.0 3.55e-01 98.3% 69.3%
2if7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.20e-01 100.0% 58.7%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 3.13e-01 100.0% 95.4%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 39.0 3.27e-01 100.0% 39.8%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 2.97e-01 98.3% 35.3%
1k3xA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.57 47.0 3.78e-01 96.6% 74.6%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.16e-01 100.0% 84.5%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.09e-01 100.0% 33.1%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 3.72e-01 100.0% 85.1%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 47.0 3.10e-01 94.9% 93.9%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 47.0 3.26e-01 98.3% 72.5%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 43.0 3.88e-01 88.1% 95.2%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.11e-01 100.0% 78.7%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.53 45.0 3.69e-01 96.6% 66.4%
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 44.0 3.05e-01 100.0% 67.1%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 43.0 2.91e-01 94.9% 53.4%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.50e-01 94.9% 96.0%
4ofyD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.58e-01 89.8% 93.8%
2dluA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 40.0 3.33e-01 86.4% 64.0%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 34.0 2.73e-01 71.2% 32.8%
3cmgA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.46e-01 83.1% 89.7%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.51 38.0 3.60e-01 96.6% 65.3%
5x1yA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.32e-01 93.2% 95.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595710 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 57.0 3.35e-01 81.4% 23.4%
4943610 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.73 47.0 3.63e-01 78.0% 30.5%
3539509 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.71 55.0 3.54e-01 100.0% 17.9%
None — 0.71 54.0 3.33e-01 83.1% 22.6%
4380331 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.69 52.0 4.89e-01 81.4% 67.1%
419 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.67 44.0 4.08e-01 78.0% 52.6%
2740077 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.67 45.0 3.89e-01 71.2% 45.4%
4529966 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 53.0 3.32e-01 89.8% 31.9%
3695968 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.66 49.0 3.49e-01 81.4% 27.6%
3391094 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 49.0 3.05e-01 81.4% 20.6%
4457054 3321.1.1.1 ↗ a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.65 45.0 3.48e-01 72.9% 40.0%
5045462 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 56.0 3.53e-01 94.9% 30.6%
2625961 3363.1.1.1 ↗ beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › ToxB_N 0.65 55.0 5.30e-01 100.0% 85.3%
3552749 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.64 41.0 2.75e-01 100.0% 16.7%
3212116 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.63 55.0 3.41e-01 98.3% 26.2%
5028523 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.63 40.0 3.97e-01 72.9% 60.0%
3773509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 43.0 4.28e-01 76.3% 70.0%
3484617 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.62 54.0 3.91e-01 98.3% 54.7%
3907690 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 42.0 2.90e-01 100.0% 20.5%
3273263 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.61 54.0 3.25e-01 100.0% 89.6%
1322624 3363.1.1.1 ↗ beta sandwiches › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › avirulence protein AvrPiz-t homologs › ToxB_N 0.61 53.0 5.17e-01 100.0% 92.3%
3995338 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 51.0 3.86e-01 100.0% 59.4%
4372287 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.60 51.0 3.18e-01 94.9% 25.4%
3617998 2003.1.10.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Synapsin 0.60 50.0 4.10e-01 93.2% 68.2%
3775191 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 52.0 2.85e-01 96.6% 10.7%
3229459 10.1.1.92 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26430 0.58 48.0 3.45e-01 94.9% 72.1%
3214083 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 48.0 3.68e-01 100.0% 59.4%
3421524 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.06e-01 100.0% 42.8%
3936845 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 48.0 3.69e-01 100.0% 59.4%
3823661 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.57 50.0 3.20e-01 100.0% 20.0%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.36e-01 100.0% 81.1%
3789341 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 44.0 2.81e-01 88.1% 73.5%
3398408 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 40.0 2.71e-01 100.0% 19.1%
3218748 62.1.1.1 ↗ beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase 0.56 48.0 3.15e-01 100.0% 60.0%
3459987 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.56 43.0 3.31e-01 88.1% 90.0%
4977279 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 48.0 3.73e-01 100.0% 80.7%
3301125 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.55 39.0 3.14e-01 78.0% 68.0%
3758839 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 47.0 3.49e-01 100.0% 63.7%
3785423 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 49.0 3.48e-01 100.0% 47.6%
4975450 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.54 47.0 3.79e-01 100.0% 77.1%
3760665 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 38.0 2.56e-01 78.0% 31.5%
3470076 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.53 44.0 3.42e-01 93.2% 99.3%
3293481 861.1.1.1 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi 0.51 46.0 3.55e-01 100.0% 98.4%
3476987 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 39.0 2.76e-01 88.1% 52.6%
5060668 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.51 43.0 3.02e-01 100.0% 40.5%
D2 high residues 91-156
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00041__D2-66
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26761.1 best Acb5 91.1 4.70e-26 100.0% 95.6%