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NC_071048.1__YP_010681226.1__PQE74_gp083__00083

Bact-Vir

NC_071048.1__YP_010681226.1__PQE74_gp083__00083

Identity

Accession:
NC_071048 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-85
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 51.0 5.31e-01 75.0% 77.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.68 46.0 3.56e-01 70.2% 34.1%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.68 48.0 4.29e-01 75.0% 78.9%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.68 46.0 3.76e-01 70.2% 39.0%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 48.0 4.97e-01 75.0% 87.3%
2egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 44.0 3.91e-01 70.2% 79.4%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 45.0 2.99e-01 73.8% 18.9%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 42.0 2.78e-01 75.0% 17.1%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 44.0 4.20e-01 100.0% 63.3%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 4.14e-01 83.3% 84.4%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 52.0 4.48e-01 98.8% 59.1%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 42.0 3.81e-01 72.6% 69.6%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.69e-01 77.4% 56.8%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.44e-01 84.5% 75.2%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 51.0 4.66e-01 98.8% 71.8%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.60 42.0 2.80e-01 75.0% 32.4%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 49.0 4.61e-01 91.7% 98.1%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.59 46.0 3.99e-01 82.1% 88.0%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.59 42.0 4.04e-01 76.2% 71.7%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.97e-01 72.6% 89.4%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.22e-01 98.8% 56.0%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 40.0 3.49e-01 77.4% 44.2%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.23e-01 98.8% 57.0%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 51.0 3.45e-01 100.0% 28.2%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.27e-01 98.8% 67.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.30e-01 100.0% 66.7%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.99e-01 98.8% 64.9%
3a57A00 2.60.270.30 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin 0.55 39.0 3.24e-01 73.8% 55.2%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.19e-01 98.8% 64.3%
4o2hA00 3.10.450.610 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.95e-01 94.0% 59.1%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.25e-01 100.0% 68.3%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 40.0 3.79e-01 90.5% 64.4%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.04e-01 98.8% 69.9%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 42.0 2.94e-01 85.7% 79.2%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 47.0 3.95e-01 100.0% 56.4%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.53 46.0 3.75e-01 98.8% 73.2%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 4.43e-01 95.2% 90.1%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 46.0 3.95e-01 100.0% 61.4%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.80e-01 100.0% 58.8%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 46.0 3.08e-01 98.8% 81.2%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.51 42.0 4.13e-01 91.7% 84.4%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.51 44.0 3.61e-01 97.6% 59.0%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.50 45.0 3.58e-01 100.0% 52.7%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3191562 5.1.4.229 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.75 50.0 3.12e-01 75.0% 12.9%
3520126 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.75 53.0 3.43e-01 77.4% 17.2%
4930408 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.73 50.0 4.76e-01 86.9% 60.0%
3263735 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 46.0 2.96e-01 73.8% 15.1%
3573723 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.71 54.0 3.30e-01 95.2% 13.2%
3288112 243.1.1.69 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 0.70 49.0 4.49e-01 72.6% 86.2%
4056787 9.1.1.9 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.70 48.0 3.69e-01 70.2% 40.6%
3424661 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.69 49.0 3.22e-01 75.0% 18.3%
4104010 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.68 48.0 4.61e-01 95.2% 64.2%
5036065 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 47.0 4.90e-01 75.0% 80.0%
3759783 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 49.0 4.22e-01 77.4% 68.5%
3742459 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.66 48.0 4.55e-01 76.2% 85.0%
3246392 12.3.1.18 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N 0.66 59.0 3.84e-01 100.0% 67.0%
3736971 5.1.3.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.66 46.0 2.96e-01 77.4% 15.8%
3276021 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.65 51.0 3.12e-01 94.0% 13.1%
3974774 897.2.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E 0.65 45.0 3.88e-01 71.4% 48.5%
1316604 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 57.0 4.48e-01 97.6% 58.0%
3802525 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 51.0 3.38e-01 85.7% 35.2%
3340789 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.64 43.0 2.79e-01 76.2% 15.9%
4983588 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 41.0 4.34e-01 75.0% 76.0%
1098206 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.62 44.0 4.20e-01 100.0% 63.3%
1949057 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 50.0 4.40e-01 96.4% 59.8%
1949089 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 51.0 4.45e-01 98.8% 60.0%
4949068 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.61 51.0 4.69e-01 98.8% 70.0%
3390634 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.61 44.0 4.30e-01 77.4% 76.8%
2605238 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 47.0 4.37e-01 96.4% 66.4%
3809562 883.1.1.20 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.60 45.0 3.47e-01 81.0% 59.5%
6327 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.60 44.0 3.69e-01 77.4% 56.8%
3287356 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.60 51.0 4.27e-01 98.8% 54.5%
4028363 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 44.0 4.31e-01 78.6% 72.2%
4976921 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 49.0 3.24e-01 89.3% 30.4%
3785596 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.59 42.0 3.37e-01 73.8% 37.6%
4977517 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 38.0 4.05e-01 75.0% 74.7%
2644388 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 47.0 4.06e-01 92.9% 56.2%
2773699 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.58 50.0 4.38e-01 94.0% 72.2%
3965583 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.58 43.0 3.64e-01 78.6% 82.1%
6395 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 47.0 4.16e-01 100.0% 59.8%
3633013 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.58 49.0 4.13e-01 94.0% 58.6%
3173368 220.1.1.244 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31261 0.57 42.0 3.58e-01 78.6% 48.6%
3785654 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.57 51.0 3.12e-01 98.8% 95.3%
3251181 883.1.1.18 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26545 0.57 44.0 3.57e-01 85.7% 65.3%
358014 243.1.1.22 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.57 48.0 4.30e-01 100.0% 66.7%
4113088 5084.1.1.2 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.56 47.0 3.67e-01 97.6% 76.4%
3968293 71.2.1.3 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › DUF3108 0.56 48.0 3.69e-01 100.0% 88.1%
3587070 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 47.0 3.96e-01 95.2% 70.3%
3280394 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 48.0 4.29e-01 100.0% 68.0%
5025577 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.54 47.0 3.93e-01 96.4% 77.9%
4825040 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 42.0 3.57e-01 85.7% 50.7%
3667738 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.53 46.0 3.59e-01 94.0% 53.1%
4953412 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 48.0 4.21e-01 100.0% 69.6%
4469406 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 36.0 2.68e-01 70.2% 28.8%
3172673 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.53 45.0 3.67e-01 94.0% 59.4%
4021025 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.59e-01 94.0% 54.7%
4827588 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 41.0 3.32e-01 84.5% 83.2%
4991720 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.53 44.0 3.95e-01 100.0% 64.0%
5052916 243.1.1.22 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.52 45.0 3.95e-01 100.0% 63.8%
4992003 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.52 46.0 3.98e-01 100.0% 79.3%
4224286 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.52 44.0 3.60e-01 94.0% 56.9%
4266402 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.52 46.0 4.05e-01 100.0% 68.0%
3402087 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.52 46.0 3.68e-01 100.0% 74.1%
D2 medium residues 88-139
PDB