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NC_071050.1__YP_010681709.1__PQE76_gp091__00091

Bact-Vir

NC_071050.1__YP_010681709.1__PQE76_gp091__00091

Identity

Accession:
NC_071050 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zhangjivirus› Bacillus_phage_vB_BsuS_PJN02

TaxID: 2920374

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.10e-01 73.2% 93.7%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.15e-01 80.4% 76.5%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.55 43.0 2.87e-01 87.5% 78.1%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.80e-01 94.6% 30.0%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.54 40.0 3.67e-01 83.9% 74.4%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.54 36.0 3.63e-01 71.4% 71.2%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 38.0 2.97e-01 92.9% 33.8%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 46.0 3.47e-01 100.0% 67.2%
3pcoB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 43.0 2.98e-01 98.2% 87.6%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 40.0 3.28e-01 85.7% 63.5%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.51 43.0 2.86e-01 96.4% 53.5%
4rlqA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 2.75e-01 94.6% 63.5%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.50 35.0 3.12e-01 76.8% 79.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940115 604.29.1.1 ↗ alpha bundles › Spectrin repeat-like › Trehalose-6-phosphate phosphatase N-terminal helical bundle › Trehalose-6-phosphate phosphatase N-terminal helical bundle › T6PP_N 0.68 54.0 4.34e-01 89.3% 99.1%
5040059 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.05e-01 98.2% 67.0%
5054413 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.59 49.0 4.00e-01 92.9% 96.1%
4882286 2499.2.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.57 39.0 2.91e-01 87.5% 26.5%
3509710 3122.1.1.1 ↗ a+b complex topology › MESD › MESD › MESD › Mesd 0.56 41.0 3.20e-01 91.1% 36.0%
3208314 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.55 46.0 2.70e-01 100.0% 23.6%
4023558 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.55 43.0 2.74e-01 92.9% 18.6%
5054779 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.55 40.0 3.19e-01 83.9% 94.0%
3517913 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 39.0 2.62e-01 94.6% 18.3%
3413411 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.54 41.0 2.43e-01 82.1% 69.2%
5077859 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.54 43.0 2.81e-01 94.6% 42.5%
4929818 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.54 38.0 3.03e-01 78.6% 33.3%
3612337 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.54 44.0 2.70e-01 94.6% 50.7%
4680096 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 37.0 3.35e-01 73.2% 61.3%
3626212 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 3.06e-01 87.5% 52.9%
3621694 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 35.0 2.93e-01 85.7% 37.1%
3274339 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 41.0 3.62e-01 89.3% 72.9%
3206220 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.51 38.0 3.06e-01 82.1% 38.4%
4794127 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 34.0 2.93e-01 73.2% 69.5%
3700547 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.50 44.0 2.51e-01 100.0% 29.5%
5063118 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.50 41.0 2.59e-01 100.0% 31.7%
1930750 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 40.0 2.98e-01 91.1% 65.2%
3589151 829.1.1.2 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB › HNHc_6 0.50 39.0 3.04e-01 92.9% 38.4%