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NC_071050.1__YP_010681805.1__PQE76_gp187__00187

Bact-Vir

Identity

Accession:: NC_071050 ↗
Kingdom:: phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zhangjivirus› Bacillus_phage_vB_BsuS_PJN02

TaxID: 2920374

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-27_91-177

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ls1A01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.63	37.0	4.15e-01	81.6%	74.2%
3vs8H00	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.57	40.0	2.85e-01	73.7%	48.2%
6ldiF01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	37.0	4.01e-01	96.5%	80.2%
4nqwA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.55	34.0	3.90e-01	80.7%	84.5%
1s7hA02	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	27.0	3.17e-01	78.9%	72.0%
4nnzA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.50	35.0	2.93e-01	70.2%	86.4%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3958294	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.60	37.0	4.04e-01	82.5%	75.6%
5043732	4009.1.1.0 ↗	alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins	0.58	33.0	4.01e-01	77.2%	90.0%
4679982	2007.1.14.3 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase	0.57	46.0	4.12e-01	86.8%	83.1%
4053923	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.56	41.0	4.31e-01	96.5%	84.8%
3267310	5049.1.2.1 ↗	alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Urea transporter › UT	0.56	45.0	3.40e-01	86.8%	92.5%
4631806	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.55	41.0	3.42e-01	96.5%	44.5%
4513974	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.55	41.0	4.05e-01	96.5%	74.2%
3090120	142.1.1.1 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r1_2,Sigma70_r2	0.53	41.0	4.11e-01	96.5%	79.7%
4507131	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.53	40.0	2.80e-01	80.7%	69.6%
4020718	4095.1.1.0 ↗	alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain	0.53	45.0	3.46e-01	93.9%	94.7%
3698721	321.2.1.1 ↗	a+b two layers › Glutamine synthetase-like › C-terminal domain in urocanase › C-terminal domain in urocanase › Urocanase_C	0.52	39.0	3.11e-01	79.8%	93.2%

D2 medium residues 28-90

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6abqB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	35.0	2.99e-01	81.0%	35.8%
2lt8A01	3.30.30.10	Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like	0.56	25.0	3.28e-01	82.5%	75.0%
2p3nA01	3.30.540.10	Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1	0.53	39.0	3.29e-01	87.3%	51.9%
3lv0A01	3.30.540.10	Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1	0.53	41.0	3.35e-01	92.1%	51.8%
6ks6q01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.52	39.0	2.60e-01	82.5%	19.8%
4r2yC00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.51	35.0	3.52e-01	79.4%	70.8%
2dhgA01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.50	37.0	3.49e-01	81.0%	82.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4441223	4018.1.1.2 ↗	a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P	0.56	43.0	3.42e-01	88.9%	46.7%
2430575	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.54	37.0	2.80e-01	95.2%	26.9%
4400946	4018.1.1.2 ↗	a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P	0.53	40.0	3.21e-01	88.9%	50.7%