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NC_071050.1__YP_010681806.1__PQE76_gp188__00188

Bact-Vir

NC_071050.1__YP_010681806.1__PQE76_gp188__00188

Identity

Accession:
NC_071050 ↗
Kingdom:
phage

Quality

97.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zhangjivirus› Bacillus_phage_vB_BsuS_PJN02

TaxID: 2920374

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-125
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.71 33.0 4.38e-01 71.5% 81.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 35.0 4.34e-01 78.9% 86.3%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 32.0 3.91e-01 91.1% 84.6%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 35.0 4.23e-01 81.3% 98.7%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 37.0 4.11e-01 82.1% 86.6%
1ymgA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.55 47.0 3.90e-01 96.7% 79.0%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.53 38.0 3.56e-01 92.7% 60.4%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 35.0 3.78e-01 96.7% 85.9%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.50 35.0 3.96e-01 78.9% 98.9%
3uonA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 43.0 3.35e-01 94.3% 83.2%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.50 38.0 4.14e-01 99.2% 95.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4037098 601.3.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.59 45.0 4.72e-01 93.5% 89.1%
3914408 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.57 41.0 4.58e-01 79.7% 92.9%
3823532 192.29.1.19 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon 0.57 48.0 4.55e-01 94.3% 76.6%
4958350 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.56 42.0 3.60e-01 79.7% 74.5%
5074120 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.54 40.0 4.40e-01 91.1% 100.0%
4024128 603.1.1.185 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27014 0.52 40.0 3.44e-01 80.5% 96.9%
4018713 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 44.0 4.53e-01 95.9% 95.7%
4946169 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.52 46.0 3.91e-01 98.4% 85.3%
3241745 192.29.1.172 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29678 0.52 43.0 4.07e-01 93.5% 74.8%
4399440 3896.1.1.3 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CobS 0.51 38.0 3.04e-01 78.0% 87.5%
3715242 633.24.1.0 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.51 32.0 3.36e-01 82.1% 69.1%
3282612 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.51 44.0 4.37e-01 93.5% 88.5%
5083938 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.51 39.0 3.43e-01 82.1% 78.9%
3593195 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.50 34.0 3.91e-01 75.6% 97.6%
3565045 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 36.0 3.45e-01 75.6% 100.0%
4221829 3896.1.1.3 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CobS 0.50 42.0 3.41e-01 93.5% 89.0%
3323160 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.50 43.0 3.47e-01 94.3% 49.2%
3403010 193.1.1.3 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › Ndc80_HEC 0.50 36.0 3.60e-01 74.0% 96.0%