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NC_071085.1__YP_010683488.1__PQF11_gp04__00004
Bact-VirNC_071085.1__YP_010683488.1__PQF11_gp04__00004
Identity
- Accession:
- NC_071085 ↗
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Aliceevansviridae›
Brussowvirus›
Streptococcus_phage_SW18
TaxID: 2419638
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-183
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17289.9 best | Terminase_6C | 35.9 | 1.00e-08 | 87.3% | 97.4% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dkwA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.86 | 81.0 | 7.60e-01 | 98.2% | 88.7% |
| 2wbnA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.84 | 79.0 | 7.71e-01 | 98.8% | 96.1% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.83 | 78.0 | 7.40e-01 | 98.2% | 93.1% |
| 3c6aA00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.79 | 76.0 | 7.04e-01 | 100.0% | 91.4% |
| 1kcfB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.71 | 64.0 | 5.65e-01 | 94.5% | 83.8% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 31.0 | 3.78e-01 | 96.4% | 80.6% |
| 3id6A01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.58 | 36.0 | 4.44e-01 | 82.4% | 97.2% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 46.0 | 4.23e-01 | 83.0% | 91.6% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 37.0 | 4.34e-01 | 92.7% | 93.6% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.57 | 40.0 | 3.67e-01 | 71.5% | 84.3% |
| 6ie0A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 34.0 | 3.71e-01 | 90.9% | 70.1% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 44.0 | 3.97e-01 | 82.4% | 91.8% |
| 2dstA00 | 3.40.50.12270 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 40.0 | 4.63e-01 | 100.0% | 100.0% |
| 4tv5A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.54 | 38.0 | 3.36e-01 | 71.5% | 89.4% |
| 2zsjA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 29.0 | 3.60e-01 | 71.5% | 85.6% |
| 1d5wA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 37.0 | 4.15e-01 | 93.3% | 96.7% |
| 2w91A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 23.0 | 2.85e-01 | 86.7% | 66.0% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 30.0 | 3.71e-01 | 94.5% | 95.2% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2125479 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.90 | 87.0 | 8.11e-01 | 100.0% | 92.9% |
| 5081671 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.90 | 85.0 | 8.24e-01 | 98.2% | 93.3% |
| 3942673 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.87 | 82.0 | 7.80e-01 | 98.8% | 93.2% |
| 4929631 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 83.0 | 8.04e-01 | 100.0% | 94.4% |
| 4034552 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.86 | 81.0 | 7.92e-01 | 97.6% | 94.9% |
| 185684 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.86 | 81.0 | 7.60e-01 | 98.2% | 88.7% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.85 | 79.0 | 7.23e-01 | 96.4% | 94.6% |
| 3944867 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.84 | 79.0 | 7.16e-01 | 98.8% | 95.8% |
| 5002634 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.84 | 78.0 | 7.54e-01 | 96.4% | 95.0% |
| 4524082 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.84 | 79.0 | 7.56e-01 | 98.2% | 92.4% |
| 134144 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.84 | 79.0 | 7.71e-01 | 98.8% | 96.1% |
| 3978199 | 2484.1.1.248 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GpA_nuclease | 0.82 | 78.0 | 6.76e-01 | 100.0% | 94.6% |
| 4972935 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 78.0 | 7.58e-01 | 99.4% | 94.4% |
| 3964372 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.82 | 78.0 | 7.30e-01 | 100.0% | 88.2% |
| 5080207 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 77.0 | 7.13e-01 | 98.2% | 94.5% |
| 1949055 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.81 | 77.0 | 7.28e-01 | 99.4% | 94.2% |
| 3166064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 74.0 | 6.61e-01 | 96.4% | 95.9% |
| 4954544 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.78 | 71.0 | 6.77e-01 | 96.4% | 93.7% |
| 4429348 | 2484.1.1.311 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, DDR, FtsA | 0.68 | 61.0 | 4.47e-01 | 95.2% | 97.8% |
| 3169999 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.67 | 50.0 | 5.05e-01 | 93.9% | 76.4% |
| 4771745 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.66 | 32.0 | 3.89e-01 | 95.8% | 69.1% |
| 3976937 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.65 | 57.0 | 4.28e-01 | 95.2% | 97.8% |
| 5073213 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.62 | 55.0 | 4.92e-01 | 93.3% | 91.4% |
| 3775033 | 3164.1.1.0 ↗ | few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein | 0.61 | 46.0 | 4.24e-01 | 76.4% | 74.8% |
| None | — | 0.59 | 43.0 | 3.71e-01 | 76.4% | 73.2% | |
| 3422647 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.58 | 43.0 | 3.54e-01 | 76.4% | 66.2% |
| 4929499 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.58 | 45.0 | 4.63e-01 | 88.5% | 84.4% |
| 3482921 | 2484.1.1.170 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ZSWIM1-3_RNaseH-like | 0.57 | 41.0 | 4.19e-01 | 75.8% | 75.8% |
| 3827180 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.55 | 39.0 | 3.97e-01 | 93.9% | 72.7% |
| 3487630 | 2484.1.1.170 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ZSWIM1-3_RNaseH-like | 0.55 | 40.0 | 3.47e-01 | 74.5% | 76.3% |
| 3507332 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.54 | 42.0 | 4.50e-01 | 88.5% | 95.0% |
| 3952404 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.54 | 41.0 | 4.25e-01 | 95.8% | 86.0% |
| 3925388 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.54 | 28.0 | 3.69e-01 | 95.8% | 92.1% |
| 3352560 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.53 | 44.0 | 3.60e-01 | 87.3% | 69.8% |
| 3453547 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.53 | 43.0 | 3.66e-01 | 86.1% | 76.7% |
| 3587332 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.53 | 40.0 | 3.31e-01 | 77.0% | 84.6% |
| None | — | 0.53 | 42.0 | 3.88e-01 | 98.8% | 65.2% | |
| 3428282 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.53 | 43.0 | 3.57e-01 | 87.3% | 68.1% |
| 4998382 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.53 | 38.0 | 3.96e-01 | 77.0% | 79.4% |
| 5072741 | 5073.1.2.23 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › Hydrolase | 0.52 | 39.0 | 2.77e-01 | 78.2% | 60.0% |
| 5021851 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 44.0 | 3.50e-01 | 91.5% | 90.7% |
| None | — | 0.51 | 42.0 | 3.94e-01 | 86.7% | 90.7% | |
| 3303791 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 47.0 | 3.30e-01 | 100.0% | 88.5% |
| 3960995 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.51 | 39.0 | 3.52e-01 | 80.6% | 96.5% |
| 3628252 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.51 | 47.0 | 3.54e-01 | 98.8% | 72.3% |
| 4003694 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.51 | 46.0 | 3.43e-01 | 97.6% | 60.2% |
| 3307409 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.50 | 41.0 | 3.77e-01 | 87.3% | 79.5% |
| 3586348 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 46.0 | 3.47e-01 | 97.0% | 71.4% |
| 3285572 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.50 | 37.0 | 3.87e-01 | 95.2% | 82.6% |
| 4105352 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.50 | 42.0 | 3.52e-01 | 88.5% | 92.3% |