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NC_071085.1__YP_010683515.1__PQF11_gp31__00031

Bact-Vir

NC_071085.1__YP_010683515.1__PQF11_gp31__00031

Identity

Accession:
NC_071085 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aliceevansviridae› Brussowvirus› Streptococcus_phage_SW18

TaxID: 2419638

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-140
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07553.17 best Lipoprotein_Ltp 53.3 3.40e-14 49.5% 95.8%
PF07553.17 Lipoprotein_Ltp 70.9 1.10e-19 48.4% 97.9%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 35.0 3.47e-01 72.0% 50.0%
2r17C00 1.25.40.660 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C 0.57 49.0 3.53e-01 100.0% 37.6%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 37.0 3.44e-01 79.6% 55.4%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.54 38.0 4.19e-01 92.5% 93.2%
2rccA01 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.54 43.0 3.20e-01 89.2% 73.0%
3fhnA03 1.10.357.100 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Dsl1p vesicle tethering complex, Tip20p subunit, domain C 0.53 43.0 3.62e-01 92.5% 83.3%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 3.66e-01 96.8% 59.2%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 45.0 4.17e-01 100.0% 94.5%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 39.0 3.42e-01 78.5% 63.3%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 41.0 3.60e-01 87.1% 74.1%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.51 35.0 3.36e-01 76.3% 58.8%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.50 39.0 3.03e-01 87.1% 72.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3657736 101.35.1.19 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 0.82 75.0 7.18e-01 100.0% 90.5%
4037221 101.35.1.19 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 0.80 71.0 6.99e-01 95.7% 90.0%
3439843 101.1.1.270 ↗ alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.74 52.0 5.40e-01 73.1% 85.9%
5083335 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 45.0 3.14e-01 83.9% 80.5%
4372621 191.1.1.50 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › SlmA-like_C 0.57 45.0 3.89e-01 87.1% 73.3%
4978358 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.55 42.0 2.83e-01 83.9% 59.2%
4996789 1075.5.1.8 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 0.54 37.0 3.01e-01 73.1% 42.1%
3435293 109.4.1.123 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6 0.53 44.0 3.20e-01 96.8% 49.8%
4983602 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.53 40.0 3.47e-01 83.9% 97.5%
3586891 5048.1.1.2 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › Form_Nir_trans 0.53 45.0 3.38e-01 100.0% 78.1%
5038482 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.52 46.0 3.37e-01 98.9% 68.1%
4033979 5048.1.1.2 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › Form_Nir_trans 0.52 44.0 3.35e-01 100.0% 79.2%
3228909 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 36.0 2.67e-01 72.0% 52.3%
3940383 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.51 39.0 3.90e-01 81.7% 91.6%
5020664 1075.5.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt 0.51 35.0 2.80e-01 73.1% 62.9%
3682249 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 41.0 3.23e-01 92.5% 67.9%