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NC_071130.1__YP_010683780.1__PQZ57_gp45__00045

Bact-Vir

NC_071130.1__YP_010683780.1__PQZ57_gp45__00045

Identity

Accession:
NC_071130 ↗
Kingdom:
phage

Quality

96.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ringroadvirus› Klebsiella_phage_BUCT_47333

TaxID: 2849972

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 41.0 3.58e-01 72.3% 41.9%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.41e-01 95.4% 86.8%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.25e-01 95.4% 79.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.94e-01 95.4% 69.4%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 45.0 3.63e-01 90.8% 96.4%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 48.0 4.02e-01 100.0% 92.6%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.55 38.0 3.93e-01 96.9% 77.0%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.08e-01 92.3% 78.7%
2a6aB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 41.0 3.44e-01 86.2% 96.6%
2g7zA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.53 46.0 3.82e-01 100.0% 95.8%
3cb6A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.53 44.0 3.34e-01 96.9% 63.4%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.88e-01 95.4% 76.5%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.92e-01 86.2% 77.0%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.85e-01 100.0% 84.2%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 41.0 2.89e-01 87.7% 88.4%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.52 46.0 4.22e-01 100.0% 97.6%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 43.0 3.53e-01 100.0% 92.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971733 11.9.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH 0.61 51.0 3.39e-01 100.0% 69.1%
3629491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 4.40e-01 100.0% 85.5%
3863194 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 45.0 3.72e-01 86.2% 88.5%
3826272 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 47.0 3.01e-01 100.0% 17.6%
4168024 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.57 45.0 3.62e-01 90.8% 95.7%
4973114 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.57 41.0 3.69e-01 78.5% 85.3%
5010246 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 46.0 3.48e-01 95.4% 60.6%
3505666 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.57 38.0 3.58e-01 70.8% 91.8%
3246591 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.56 45.0 3.30e-01 90.8% 45.8%
4617429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.20e-01 96.9% 89.1%
3696336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.62e-01 100.0% 53.7%
3940847 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.55 47.0 3.98e-01 95.4% 67.3%
4232371 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 38.0 3.11e-01 100.0% 39.2%
3922240 3755.3.1.321 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WHAMM-JMY_N 0.55 40.0 3.43e-01 80.0% 94.5%
4272595 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 38.0 4.17e-01 93.8% 98.0%
3783181 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 38.0 3.28e-01 75.4% 95.5%
4939583 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 44.0 3.30e-01 95.4% 62.2%
4029037 5.1.5.145 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › eIF2A 0.53 46.0 2.77e-01 100.0% 96.3%
4646871 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.52 36.0 2.93e-01 100.0% 37.6%
4169163 2007.1.7.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase 0.52 36.0 2.63e-01 73.8% 95.3%
3992596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 2.78e-01 84.6% 37.5%
4208333 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.44e-01 100.0% 50.0%