←Back to structures
NC_071134.1__YP_010684054.1__PQZ61_gp57__00057
Bact-VirNC_071134.1__YP_010684054.1__PQZ61_gp57__00057
Identity
- Accession:
- NC_071134 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Taxonomy
TaxID: 2894801
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-62
Domain cluster:
rep: OQ164647.1__WBM58756.1__vBValMPVA8_34__00034__D3-59
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mheA00 | 3.30.70.2400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 | 0.68 | 60.0 | 5.68e-01 | 100.0% | 86.5% |
| 4pwuC00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 59.0 | 5.45e-01 | 100.0% | 100.0% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.65 | 53.0 | 4.50e-01 | 100.0% | 53.7% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 54.0 | 4.73e-01 | 100.0% | 88.8% |
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.63 | 54.0 | 4.39e-01 | 100.0% | 56.9% |
| 5mz2I00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.62 | 51.0 | 4.00e-01 | 100.0% | 41.7% |
| 6w6vE01 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.62 | 52.0 | 4.01e-01 | 100.0% | 77.4% |
| 5t0oA03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.62 | 51.0 | 4.43e-01 | 96.7% | 98.0% |
| 1ueyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 45.0 | 3.67e-01 | 100.0% | 40.2% |
| 2wmcA00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.59 | 51.0 | 3.74e-01 | 98.4% | 35.1% |
| 3smzA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 51.0 | 4.36e-01 | 96.7% | 84.5% |
| 4dohB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 47.0 | 4.02e-01 | 100.0% | 53.3% |
| 2p5vA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.59 | 49.0 | 4.47e-01 | 96.7% | 96.4% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.58 | 42.0 | 3.27e-01 | 100.0% | 33.1% |
| 2byeA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 45.0 | 3.92e-01 | 100.0% | 54.5% |
| 3s98A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 3.52e-01 | 100.0% | 47.4% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 4.39e-01 | 98.4% | 91.0% |
| 3lb6C01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 3.61e-01 | 100.0% | 51.1% |
| 2cq4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 47.0 | 4.15e-01 | 96.7% | 87.6% |
| 2cpdA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 49.0 | 4.63e-01 | 96.7% | 100.0% |
| 2cuiA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 3.84e-01 | 100.0% | 50.9% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.56 | 42.0 | 4.26e-01 | 100.0% | 85.7% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.56 | 47.0 | 3.44e-01 | 100.0% | 65.8% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.56 | 46.0 | 4.21e-01 | 96.7% | 96.4% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.56 | 44.0 | 4.18e-01 | 95.1% | 100.0% |
| 2cqiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 47.0 | 4.06e-01 | 100.0% | 81.6% |
| 1whwA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 47.0 | 4.18e-01 | 100.0% | 92.6% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 3.56e-01 | 100.0% | 45.6% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 3.99e-01 | 100.0% | 95.8% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 40.0 | 4.01e-01 | 100.0% | 86.9% |
| 4oy6A00 | 2.70.50.50 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 | 0.52 | 44.0 | 3.22e-01 | 100.0% | 33.3% |
| 4hsrB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 36.0 | 2.35e-01 | 77.0% | 63.5% |
| 6ahuH01 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.51 | 41.0 | 3.72e-01 | 100.0% | 96.8% |
| 4ncbA01 | 3.30.530.60 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.51 | 39.0 | 3.19e-01 | 95.1% | 96.6% |
| 3gbwA00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.50 | 42.0 | 3.23e-01 | 100.0% | 41.0% |
| 3e4cB00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 42.0 | 2.84e-01 | 98.4% | 40.1% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.82e-01 | 100.0% | 83.9% |
| 1b33N01 | 3.30.1490.170 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) | 0.50 | 40.0 | 4.16e-01 | 96.7% | 100.0% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3721982 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.74 | 65.0 | 5.57e-01 | 96.7% | 98.9% |
| 3743821 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.68 | 53.0 | 3.99e-01 | 100.0% | 35.2% |
| 3300115 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.66 | 56.0 | 4.79e-01 | 100.0% | 73.3% |
| 3929041 | 221.1.1.69 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM | 0.66 | 57.0 | 4.80e-01 | 100.0% | 58.1% |
| 3965635 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.65 | 56.0 | 5.52e-01 | 93.4% | 98.5% |
| 5034126 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.65 | 47.0 | 4.73e-01 | 75.4% | 100.0% |
| 3704849 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.64 | 52.0 | 3.56e-01 | 100.0% | 31.6% |
| 3681269 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.63 | 54.0 | 4.50e-01 | 96.7% | 62.7% |
| 4079733 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.63 | 46.0 | 3.11e-01 | 83.6% | 32.0% |
| 3457076 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.62 | 53.0 | 3.79e-01 | 98.4% | 31.4% |
| 3931549 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.62 | 52.0 | 3.86e-01 | 98.4% | 34.9% |
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.61 | 46.0 | 4.72e-01 | 98.4% | 94.5% |
| 5082628 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.60 | 49.0 | 4.26e-01 | 93.4% | 100.0% |
| 3338688 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 52.0 | 5.12e-01 | 100.0% | 95.4% |
| 3261320 | 317.1.1.1 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E | 0.60 | 51.0 | 3.77e-01 | 98.4% | 36.5% |
| 3577944 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 52.0 | 3.99e-01 | 96.7% | 75.6% |
| 3592726 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 49.0 | 4.14e-01 | 100.0% | 58.3% |
| 4965210 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.58 | 49.0 | 4.98e-01 | 100.0% | 98.3% |
| 3490403 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.57 | 48.0 | 3.97e-01 | 100.0% | 53.3% |
| 3171728 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.56 | 39.0 | 3.03e-01 | 83.6% | 31.0% |
| 3890321 | 10.32.1.5 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd | 0.56 | 49.0 | 3.73e-01 | 100.0% | 47.6% |
| 3631964 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 47.0 | 4.52e-01 | 95.1% | 94.3% |
| 3703177 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 46.0 | 3.72e-01 | 95.1% | 100.0% |
| 3596319 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.55 | 47.0 | 3.53e-01 | 100.0% | 38.0% |
| 3578859 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 37.0 | 2.40e-01 | 70.5% | 15.8% |
| 3513020 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.89e-01 | 100.0% | 55.5% |
| 3818152 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.54 | 46.0 | 3.23e-01 | 98.4% | 68.4% |
| 3484942 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 45.0 | 3.90e-01 | 100.0% | 59.0% |
| 1514559 | 11.1.1.49 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LPMO_10 | 0.54 | 33.0 | 2.19e-01 | 82.0% | 14.6% |
| 3493644 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.53 | 45.0 | 3.41e-01 | 100.0% | 69.7% |
| 3177323 | 11.1.1.378 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 | 0.53 | 43.0 | 3.23e-01 | 100.0% | 41.6% |
| 4594823 | 10.12.1.15 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD | 0.53 | 45.0 | 3.27e-01 | 100.0% | 72.3% |
| 3593205 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.53 | 43.0 | 3.72e-01 | 95.1% | 56.8% |
| 3909542 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.53 | 45.0 | 3.18e-01 | 100.0% | 33.3% |
| 3274094 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.52 | 39.0 | 2.98e-01 | 82.0% | 74.8% |
| 3199216 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.52 | 43.0 | 3.28e-01 | 96.7% | 81.9% |
| 3787525 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.52 | 43.0 | 3.06e-01 | 100.0% | 31.1% |
| 4632701 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.42e-01 | 98.4% | 45.0% |
| 3411287 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.53e-01 | 100.0% | 50.0% |
| 4029586 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.51 | 42.0 | 3.33e-01 | 100.0% | 76.0% |
| 4037721 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 3.85e-01 | 100.0% | 68.4% |
| 3189996 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.51 | 38.0 | 2.65e-01 | 83.6% | 62.4% |
| 4999321 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.63e-01 | 100.0% | 61.0% |
| 4107133 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.51 | 42.0 | 4.02e-01 | 100.0% | 98.7% |
| 4017488 | 11.1.1.498 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 | 0.51 | 42.0 | 3.27e-01 | 100.0% | 52.3% |
| 3487137 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 40.0 | 3.28e-01 | 100.0% | 43.8% |
| 3252771 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.50 | 40.0 | 3.74e-01 | 96.7% | 80.0% |
| 3247277 | 5069.1.3.99 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › NRF | 0.50 | 39.0 | 3.06e-01 | 93.4% | 36.3% |
| 3508246 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.50 | 46.0 | 3.52e-01 | 100.0% | 50.8% |
| 3535501 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.50 | 43.0 | 3.56e-01 | 100.0% | 65.2% |